Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o11r
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.9  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 149 SGSTNPTSMTVSGQHPPSSAAS 84
           S ST+P + T S  +P  SAA+
Sbjct: 75  SASTSPAARTTSSMYPYVSAAA 96


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 161 LVDMSGSTNPTSMTVSGQHPPS 96
           +V M+ S NP ++ ++  HPP+
Sbjct: 508 IVMMNFSKNPVTVNLTKLHPPA 529


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 311 LTKHQHSLRTPTYFNKDLNISNF 379
           LTKH    +   YF +D+ +++F
Sbjct: 209 LTKHNVPEQRLNYFTEDVGLNHF 231


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 436 VLPLSTLSMDRRGDV 480
           VL LST+S+D R D+
Sbjct: 284 VLTLSTISLDSRTDL 298


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 311 LTKHQHSLRTPTYFNKDLNISNF 379
           LTKH    +   YF +D+ +++F
Sbjct: 209 LTKHNVPEQRLNYFTEDVGLNHF 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,053
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)