Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o11f
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    33   0.039
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    31   0.091
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   3.4  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   7.9  

>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 32.7 bits (71), Expect = 0.039
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 389 PPHITMETWRSSKGRNHSRMYRNSVKRQAKSARLFPSGMSWKPR 520
           P  +T+ T  S+KGR    +Y+N V     SA LF +G+S+  R
Sbjct: 32  PQPVTVHTTNSAKGRLGEFLYQNRVSVGLGSAALFLAGLSYYKR 75


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.091
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +1

Query: 370 GGELSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRNVM 510
           G + SRS A+YYG+ +K K +K + D P+++  +  +  I PQ   M
Sbjct: 55  GSQASRSRAFYYGE-DKRKIEKKMLDTPDRK--SYSLSPISPQSQDM 98


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 450 TGTASRDKRNLRDCSPAE-CHGSPEAGRSGSAMESTGI 560
           +GT   D RN RD  P E    S  AGR G  +  T I
Sbjct: 663 SGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVI 700


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 400 YYGDLEKLKRQKPLEDVPEQR 462
           YY DL  L+RQK + + PE +
Sbjct: 60  YYSDLSALERQKHMLENPEYK 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,112
Number of Sequences: 5004
Number of extensions: 49453
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)