Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o11f
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 32 0.28
02_02_0055 + 6403183-6403357,6404090-6404673 31 0.49
08_01_0665 - 5745741-5746881,5747188-5747297 29 2.6
05_05_0010 - 21496089-21496487 29 2.6
07_03_0387 - 17536026-17536636,17536772-17537150 29 3.5
04_04_0615 + 26633438-26633570,26633711-26633840,26634203-26634836 29 3.5
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 27 8.0
10_08_0897 - 21419639-21420633,21420826-21421153 27 8.0
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 27 8.0
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 27 8.0
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 27 8.0
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 27 8.0
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757... 27 8.0
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 32.3 bits (70), Expect = 0.28
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 317 RHLSIA*KYEPWTEPEAKAGSSHAPPHITMETWRSSKGRNHSRMYRN-SVKRQAKSARLF 493
R S + KY W P +AGS P ++ ME R KG+ +SR V R + AR
Sbjct: 328 RQYSYSLKYINW--PCLQAGSDSRPTYLPMEVCRIVKGQRYSRKLNECQVTRMLRLARET 385
Query: 494 P 496
P
Sbjct: 386 P 386
>02_02_0055 + 6403183-6403357,6404090-6404673
Length = 252
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 428 GRNHSRMYRNSVKRQAKSARLFPSGMSWKPRGWSKWV 538
G +H R + R+A++ R PSG WKP G K +
Sbjct: 64 GSDHDRYFFTMAAREAQARRTTPSGF-WKPTGTKKTI 99
>08_01_0665 - 5745741-5746881,5747188-5747297
Length = 416
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 557 SGRLHCRPTSTSLGASMTFRWGTISQISLVS*RCSGTSSSGFCLLS 420
+ RL C+P + S S T ++ IS C G++ SG ++S
Sbjct: 6 ANRLRCKPNTNSSSPSRTLFGRRVTMISSSRWMCRGSAVSGSAIMS 51
>05_05_0010 - 21496089-21496487
Length = 132
Score = 29.1 bits (62), Expect = 2.6
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Frame = +3
Query: 354 RNQKPRRGALTLHRILLWRPGEAQKAETTRGCTGTASRDKRNLRDCS-----PAEC---H 509
RN + G L R+ L P + T+ G G +S +R S P+ C
Sbjct: 3 RNNGGKGGKLQEARVNL--PSTRGRGGTSSGVVGGSSSPRRLSSSSSSTASPPSSCVSSE 60
Query: 510 GSPEAGRSGSAMESTGIHYAG 572
GSPEAG G S+G+ AG
Sbjct: 61 GSPEAGGGGGGGGSSGMILAG 81
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 402 LWRPGEAQKAETTRGCTGTASRDKRNLRDCSPAECHGSPEAGRSGSAM 545
LW G A A + G TGT + LR +PAE G+ + SG+ M
Sbjct: 109 LWATGSAS-ASLSIGATGTVASGSPTLRPVTPAE--GAGLSATSGTTM 153
>04_04_0615 + 26633438-26633570,26633711-26633840,26634203-26634836
Length = 298
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 365 AKAGSSHAPPHITMETWRSSKGRNHSRMYRNSVKRQAKSA 484
A AG + APP I + W S G + + R++ + + A
Sbjct: 184 AAAGGAEAPPDIYLRLWNSEVGDSFRKSARSAAREDQEPA 223
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 361 RSQGGELSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEI-CEIV----PQRNVMEAPRL 525
+S+ ++ Y+Y +L ++K+QK + + + T EI E + P+ + + ++
Sbjct: 272 KSEWPKIRDKKLYFYRELSRIKKQKKEKSLAIETPRTQEIKIEQIKSEEPREEIQKLDKV 331
Query: 526 VEVGRQWSLPE 558
+ QW + E
Sbjct: 332 LSEEEQWEVNE 342
>10_08_0897 - 21419639-21420633,21420826-21421153
Length = 440
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 361 RSQGGELSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEI-CEIV----PQRNVMEAPRL 525
+S+ ++ Y+Y +L ++K+QK + + + T EI E + P+ + + ++
Sbjct: 272 KSEWPKIRDKELYFYRELSRIKKQKKEKSLAIETPRTQEIKIEQIKSEEPREEIQKLDKV 331
Query: 526 VEVGRQWSLPE 558
+ QW + E
Sbjct: 332 LSEEEQWEVNE 342
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 376 ELSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRN 504
+LSR +++ L++ Q VP+Q Q+T ++ +++P N
Sbjct: 402 DLSRQISFHPQFLQQNNIQFNTALVPQQNQQTEQLAKVIPTPN 444
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = -1
Query: 534 HFDQ-PRGFHDIPLGNNLADFACLLTLFRYILEWFLPFELLQVSIVICGGA*ELPALASG 358
H D PR H +PL NNL + L+ L + P + A + P L
Sbjct: 862 HLDSCPRLIHVLPLSNNLPSLETIQILYCTSLIYVFPLNTANSKGTVSNDAIDFPKLKHV 921
Query: 357 SVH 349
+H
Sbjct: 922 HLH 924
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = -1
Query: 534 HFDQ-PRGFHDIPLGNNLADFACLLTLFRYILEWFLPFELLQVSIVICGGA*ELPALASG 358
H D PR H +PL NNL + L+ L + P + A + P L
Sbjct: 867 HLDSCPRLIHVLPLSNNLPSLETIQILYCTSLIYVFPLNTANSKGTVSNDAIDFPKLKHV 926
Query: 357 SVH 349
+H
Sbjct: 927 HLH 929
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 472 LSLDAVPVHPRVVSAF*ASPGLHSNMRWSV 383
L DAV V RV SAF P L +NM+ ++
Sbjct: 496 LDTDAVEVDARVSSAFCKPPALKNNMQLAI 525
>01_01_0962 +
7570490-7570796,7571984-7572540,7572702-7572749,
7572841-7573789,7574573-7575528
Length = 938
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 417 EAQKAETTRGCTGTASRDKRNLRDCSPAECHGSP 518
EA KA +R +G S + R S A CHGSP
Sbjct: 741 EADKASHSRSSSGEGSINSRT----SEASCHGSP 770
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,999
Number of Sequences: 37544
Number of extensions: 337569
Number of successful extensions: 997
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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