Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o11f
         (573 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-P...    31   0.84 
AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-P...    31   0.84 
AY075191-1|AAL68060.1|  623|Drosophila melanogaster AT13424p pro...    28   7.8  
AE014134-769|AAF50984.2|  622|Drosophila melanogaster CG15631-PA...    28   7.8  

>AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-PB,
            isoform B protein.
          Length = 2968

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 435  TTRGCTGTA---SRDKRNLRDCSPAECHGSPEAGR 530
            TTRGC+ +    S D RN R CS +EC+    A R
Sbjct: 2496 TTRGCSSSVECDSSDFRNCRSCSGSECNAIDLANR 2530


>AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-PA,
            isoform A protein.
          Length = 2931

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 435  TTRGCTGTA---SRDKRNLRDCSPAECHGSPEAGR 530
            TTRGC+ +    S D RN R CS +EC+    A R
Sbjct: 2459 TTRGCSSSVECDSSDFRNCRSCSGSECNAIDLANR 2493


>AY075191-1|AAL68060.1|  623|Drosophila melanogaster AT13424p
           protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 422 SKGRNHSRMYRNSVKRQAKSARLFPSGMS 508
           SK  +H+   R S K+QAKS RL  S  S
Sbjct: 276 SKSAHHTNSSRKSTKKQAKSHRLIKSHSS 304


>AE014134-769|AAF50984.2|  622|Drosophila melanogaster CG15631-PA
           protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 422 SKGRNHSRMYRNSVKRQAKSARLFPSGMS 508
           SK  +H+   R S K+QAKS RL  S  S
Sbjct: 275 SKSAHHTNSSRKSTKKQAKSHRLIKSHSS 303


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,800,542
Number of Sequences: 53049
Number of extensions: 570702
Number of successful extensions: 1685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2255362491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)