Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o11f
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U88310-3|AAB42337.1|  608|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    27   9.5  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    27   9.5  
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    27   9.5  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    27   9.5  

>Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical
           protein H03G16.5 protein.
          Length = 227

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 406 GDLEKLKRQKPLEDVPEQRQETSEICEIVPQR 501
           GDL+++ RQK +E    ++Q+ +++ EI   R
Sbjct: 13  GDLQEINRQKDVEIEDLEQQKEADVAEIAALR 44


>Z81512-1|CAB04173.1|  601|Caenorhabditis elegans Hypothetical
           protein F25C8.1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 379 LSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEI 480
           + + T YYYG  ++LK ++ +E   E  +E  ++
Sbjct: 24  VDKLTEYYYGGEKRLKARREVEKCVEDHKELQDL 57


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 381 LTLHRILLWRPGEAQKAETTRGCTGTA 461
           +T+ RI+ W PG  Q +E  +  +  A
Sbjct: 320 MTIRRIMFWNPGNVQLSEMAKALSAEA 346


>U88310-3|AAB42337.1|  608|Caenorhabditis elegans Hypothetical
           protein C24G7.1 protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 444 GCTGTASRDKRNLRDCSPAE 503
           GCT     ++RNL++C+P E
Sbjct: 379 GCTPAVYNNERNLKECTPFE 398


>U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical
           protein C24G7.2 protein.
          Length = 635

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 382 SRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEICEIVPQRNVMEAPRLVEVGRQWS 549
           SRS       + +LK+ + LE     ++ET   CE       M  P+ +  G++W+
Sbjct: 51  SRSQMIIEVPVAQLKKLRKLEGTVSIKRETQHFCE----TTTMHGPKRIFQGKRWA 102


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 381 LTLHRILLWRPGEAQKAETTRGCTGTA 461
           +T+ RI+ W PG  Q +E  +  +  A
Sbjct: 320 MTIRRIMFWNPGNVQLSEMAKALSAEA 346


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
            interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 228  FPNYQLNTQRPHKETQLGHFPRTAHCYSHVYALKQVRM 115
            F N++L ++   K T+   F R   C+SH++ L  V++
Sbjct: 920  FQNFKLYSKEKRKFTRKTIFNRFFLCFSHIFGLFLVKI 957


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +1

Query: 331  RIKIRTVDGTRSQGGELSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEICEI-VPQRNV 507
            R+K RT +  R     L R   +        K   P+E   E  QE++E  E+  P R +
Sbjct: 1353 RVKQRTEEANRILDEYLKRVAEFKKQQKRLSKSPAPMELDAEPVQESAEAVEMGSPARRI 1412

Query: 508  MEAPRLVEVGRQWSLPEYTTPE 573
             E    VE   +   P+   P+
Sbjct: 1413 EEDQENVEEEVEMRTPQKKNPD 1434


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
            chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +1

Query: 331  RIKIRTVDGTRSQGGELSRSTAYYYGDLEKLKRQKPLEDVPEQRQETSEICEI-VPQRNV 507
            R+K RT +  R     L R   +        K   P+E   E  QE++E  E+  P R +
Sbjct: 1353 RVKQRTEEANRILDEYLKRVAEFKKQQKRLSKSPAPMELDAEPVQESAEAVEMGSPARRI 1412

Query: 508  MEAPRLVEVGRQWSLPEYTTPE 573
             E    VE   +   P+   P+
Sbjct: 1413 EEDQENVEEEVEMRTPQKKNPD 1434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,447
Number of Sequences: 27780
Number of extensions: 287071
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)