Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o11f
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   3.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   3.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.7  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 447 CTGTASRDKRNLRDCSPAEC 506
           CT  A+  KRNL D    EC
Sbjct: 56  CTPDAAELKRNLPDALENEC 75


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 447 CTGTASRDKRNLRDCSPAEC 506
           CT  A+  KRNL D    EC
Sbjct: 56  CTPDAAELKRNLPDALENEC 75


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 237 LWPFPNYQLN 208
           +WPF  YQ+N
Sbjct: 150 IWPFKEYQMN 159


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 301 QDVTKTSSKYRIKI 342
           +D+T TS+ YR+K+
Sbjct: 29  KDITSTSALYRLKL 42


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +2

Query: 347 PWTEPEAKAGSSHAPPHITMETWRSSKGRNHSRMYRNSVKRQAKSARLFPS 499
           P  + + ++  SH    + + T    + R+ S     S     +S+ LFPS
Sbjct: 371 PQYQIDKRSMGSHHGQRVMVRTCNGLELRDPSLFVETSASELVESSVLFPS 421


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 236 CGLSQTTN*TLKGHTRKHS 180
           CG   T +  LK HTR H+
Sbjct: 209 CGKGFTCSKQLKVHTRTHT 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,324
Number of Sequences: 438
Number of extensions: 3577
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)