Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o09r
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    27   2.1  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    27   3.7  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    26   4.9  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
 Frame = -3

Query: 707 TRTVQSRAVSG*AIRREDVGNNPQGL-RSCWCPTGGLVGLLLLQETDSTDDANAGVVLRL 531
           T TV +RA+    +R    G NP  L R        +V  L   + D T       V  +
Sbjct: 122 TATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQVATI 181

Query: 530 DVRGTRGRVGGHLRPQVESRPASTAASLSTGPSLSEE-AVTE---LTVGYIS 387
              G    +G  L   +E        ++  G ++S+E  VTE      GYIS
Sbjct: 182 SANGDT-HIGELLAKAMERVGKEGVITVKEGRTISDELEVTEGMKFDRGYIS 232


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 664 VERTSETILKVCDLAGARLADSLAYYCCRKPTQLMMLMQV 545
           + +T  TI+ V   A  R+  + A YCC K    M++M +
Sbjct: 125 LRKTKGTIVIVSSGAAVRVFPAWAAYCCSKAAINMLVMNL 164


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 741 YRALCTWRTKADADC 697
           YRAL TW  KAD +C
Sbjct: 91  YRALDTWSIKADENC 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,602
Number of Sequences: 5004
Number of extensions: 49640
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)