Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o09f
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    28   1.1  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   1.4  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    26   3.2  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   4.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.2  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   7.4  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.4  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.8  

>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +3

Query: 258 SSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPE 437
           S SP  SP   H    V  + T  I PT P+ +     + +EEK  L    E A+    E
Sbjct: 140 SKSPIPSPETIHKNIDVEEKET--IEPTTPVKEVETTAHAEEEKGPLTPDSEYAARQLTE 197

Query: 438 VIPQQRTQ 461
            +  + +Q
Sbjct: 198 ELANKSSQ 205


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +3

Query: 255 ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNL----PTSLENAS 422
           ISS+P + P+   T   + S ++  +   PP++ +      +  K++L    P SL NA+
Sbjct: 290 ISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSHKYSLSSGPPASLYNAN 349

Query: 423 VTFPE 437
              PE
Sbjct: 350 ALTPE 354


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +3

Query: 252 EISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTF 431
           E+S S   S   ++   PV S+H H ++   P  ++    Y  ++  N+  ++ENA    
Sbjct: 31  EVSESRTSSSGVDNEP-PVNSEHVHLVKTVFPHLESSAIAYDLQKTKNVDATIENALRGQ 89

Query: 432 PEVIPQQRTQV 464
           P  +P + + +
Sbjct: 90  PLPLPPRNSSL 100


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 162 DFMTKLEQELTFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHT 323
           D ++K +  +  + +      L +D       SSS  +    NHTGN ++S+ T
Sbjct: 668 DVVSKNKDNIAILADREARPQLLLDDNNDSSSSSSEHLISFNNHTGNKILSRQT 721


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 372  YIKEEKFNLPTSLENASVTFPEVIP 446
            YI    F +P +LEN S    E++P
Sbjct: 1124 YISNPIFQIPLTLENGSSAMVEILP 1148


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 256 ISGLHFVSMSNSPVSFVLSTKVSSCSNFVIKSPSQLFKKSSI 131
           + GLH  + S++   F  S   SS  NFVI S    F+  +I
Sbjct: 10  VCGLHSFTNSSAQQLFSKSIAHSSRRNFVISSSCTKFRNVAI 51


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 225 LDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQG 368
           L + T C P ++ +  + P+ N+T +         + P+ P S T QG
Sbjct: 656 LFVQTNCIPPVTQASSLVPSKNNTASSSSLMLDSPVTPSSPYS-TSQG 702


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
 Frame = +3

Query: 201 DNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIK 380
           DN +E    D DTK +   +S  + S   N  G+      T + +P P  S     G   
Sbjct: 649 DNVDEDIESDHDTKIEELANSDVEPSTEQNIGGDVSWGASTFQSKPQPSFS----FGLTL 704

Query: 381 EEKFNLP-TSLENASVTFPEVIPQQRTQ--VQNQPMIFQQVVQSPVFVNLGPAG 533
           ++K N P  +      T    + Q++ +  V  +P  F    +S    N+  AG
Sbjct: 705 DDKSNTPGKNFSIFGKTAETQVEQKKPENNVLTKPFSFAPSDKSMFAANIPSAG 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,466
Number of Sequences: 5004
Number of extensions: 48975
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)