Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o09f
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0529 + 3874865-3876285,3876352-3876367 31 0.46
07_03_1233 + 25057139-25057262,25058340-25058911 29 2.5
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 29 2.5
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 29 2.5
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374... 28 5.7
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 28 5.7
07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997 28 5.7
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048... 28 5.7
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835... 27 7.5
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107... 27 10.0
08_02_0453 - 17331534-17331656,17332288-17332340,17332612-173327... 27 10.0
07_03_0305 - 16475127-16476017,16476058-16478067 27 10.0
06_03_1020 - 26942839-26943105,26944273-26944486,26945017-26945051 27 10.0
06_03_1016 - 26916978-26917244,26917499-26917642,26917708-269177... 27 10.0
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 27 10.0
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 27 10.0
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 27 10.0
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +3
Query: 231 IDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSL 410
I T+ + E + ++ + G+ S+ HR +PTP I GG+ + ++ + SL
Sbjct: 3 IPTETETETGTGARIPSHRRRKGSSDGSRAVHRRKPTPTKETEIPGGHGRPKRSSSALSL 62
Query: 411 ENASVTFP 434
+ A + P
Sbjct: 63 DGAGDSNP 70
>07_03_1233 + 25057139-25057262,25058340-25058911
Length = 231
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 192 TFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNH---TGNPVMSQHTHRIRPTPPISKTI 362
T ++ NE GL+ D +S PQ S N +GN + TH P P+ KT
Sbjct: 11 TSIEPRNEGGLVLKDNF----VSMIPQASATENEEAASGNQLTESRTHFAHPQHPLLKTQ 66
Query: 363 QGG 371
GG
Sbjct: 67 YGG 69
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 29.1 bits (62), Expect = 2.5
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Frame = +3
Query: 255 ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTI-QGGYIKEEKFNLPTSLE--NASV 425
+SS+P SP+ + NP MS + PP S+ I Y P L S
Sbjct: 75 LSSAP-ASPDSSSVSNP-MSPPAMSLPNQPPSSRHIFPFAYDPSPGAAAPRLLPLLQYSS 132
Query: 426 TFPE-VIPQQRTQVQNQPMIF-----QQVVQSPVFVNLGPAGNIQPMP 551
+P+ ++PQQ++ +QNQ MI QQ Q P F P Q +P
Sbjct: 133 LYPQPLLPQQQSPLQNQQMISFGSSQQQQQQQPQFGAASPLFPPQFLP 180
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 204 NTNETGLLDIDTKCKPE--ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYI 377
NTN T LL DT KP+ I+ S + + NP ++ + P + T G
Sbjct: 176 NTNSTTLLSDDTDDKPKENINQETSTSNQHEYESNPSDAEPKQKGTPEGLLVSTEGGDQA 235
Query: 378 KEEKFNLPTS 407
K + PT+
Sbjct: 236 SYVKSSTPTT 245
>11_06_0188 +
21036465-21036627,21036735-21036883,21037369-21037484,
21037939-21038101
Length = 196
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 120 DIAEIEDFLNNCDGDFMTKLEQE 188
++ E+ F++ C+GD +TKL E
Sbjct: 52 EVVEVSTFMHACEGDAVTKLTNE 74
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 27.9 bits (59), Expect = 5.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +3
Query: 249 PEISSSPQVSPNYN-HTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASV 425
P+ +PQ P + P Q ++ P + + +Q + P L+ S
Sbjct: 195 PQSQQTPQPQPQVHPQPQQPPQLQPQPQLLQQPQLPQQLQPQSQLPPQPQQPPQLQLQSQ 254
Query: 426 TFPEVIPQQRTQVQNQPMIFQQ 491
P+ PQQ Q+Q QP + QQ
Sbjct: 255 LHPQ--PQQPPQLQPQPQLHQQ 274
>07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997
Length = 471
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 180 EQELTFVDNTNETGLLDIDTKCKPE--ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPIS 353
E EL ++N N+ L + + + E S + Q + HT + M++HTH + + P
Sbjct: 409 EMELAGLNNCNQKWLANQHRRLQLEKKASQNAQFTFKTTHTSDFSMNKHTHDLSISDPFD 468
Query: 354 KTI 362
+++
Sbjct: 469 RSL 471
>04_04_1498 +
34002677-34003104,34004427-34004532,34004643-34004811,
34004901-34005088,34005644-34005763
Length = 336
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 447 QQRTQVQNQPMIFQQVVQSPVFVNLGPAGNIQPMP 551
QQ+ V +IFQ + Q P V G AG + P P
Sbjct: 51 QQQLAVLQPQLIFQAMPQLPAGVPGGAAGAVSPQP 85
>11_06_0080 -
19880319-19880957,19881800-19881948,19882266-19883589,
19883766-19883953,19884034-19884499
Length = 921
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 267 PQVSPNYNHTGNPVMSQHTHRI 332
PQ++ HTG+PV+S H H I
Sbjct: 581 PQLTMVRLHTGHPVLSMHDHDI 602
>09_04_0537 +
18410201-18410207,18410301-18410586,18410674-18410773,
18410881-18411147,18411286-18411363,18411444-18411545,
18411628-18411677,18411793-18411889,18412248-18412361,
18412495-18412666,18412865-18413217,18413812-18413898,
18413981-18414001
Length = 577
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +3
Query: 93 MNADVFNVHDIAEIEDF-----LNNCDGDFMTKLEQELTFVDNTNETGLLDIDTKCKPEI 257
M +D+ N +++++F L + D F+T + +E+ D++ D K P++
Sbjct: 331 MMSDISNAESESDVDEFSLSAVLRSTDYSFLTPVSEEVKGSDSSTFCSCESCDRKGLPDV 390
Query: 258 S--SSPQVSPNYNHTGNPVMSQHTH 326
+ SS V + N ++S H H
Sbjct: 391 TPESSQSVQQSSEMVPNQLVS-HEH 414
>08_02_0453 -
17331534-17331656,17332288-17332340,17332612-17332704,
17332747-17332903,17333246-17333384,17333467-17333529,
17337990-17338071,17338167-17338245,17338853-17339032,
17340010-17340272,17340486-17340622,17341662-17341729
Length = 478
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 199 WTIQMKQGCWTLIRNASLKFHHLHKFRRIIIIPG 300
W + MK T+I N HH + + ++I + G
Sbjct: 379 WRLNMKSRAVTVINNKYAGLHHKYAYAQVIDVQG 412
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 105 VFNVHDIAEIEDFLNNCDGDFMTKLEQELTFVD--NTNETGLLDID 236
+ N +AE+ DF NN + K+ + LT++D N +G L +D
Sbjct: 505 MMNEKMVAEVMDFSNNLLEGQLQKVPENLTYLDLSKNNLSGPLPLD 550
>06_03_1020 - 26942839-26943105,26944273-26944486,26945017-26945051
Length = 171
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 130 SAMSWTLKTSAFIKGSISI 74
S +WTLK+ A +KGS S+
Sbjct: 121 STNTWTLKSEALLKGSFSV 139
>06_03_1016 -
26916978-26917244,26917499-26917642,26917708-26917783,
26917875-26918010,26918332-26918473,26920020-26920035,
26920222-26920574
Length = 377
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 130 SAMSWTLKTSAFIKGSISI 74
SA +WTLKT A +KG S+
Sbjct: 67 SANTWTLKTGAKLKGPFSV 85
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 27.1 bits (57), Expect = 10.0
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 120 DIAEIEDFLNNCDGDFMTKLEQELTFVD-NTNETGLLDID-TKCKPEISSSPQVSPNYNH 293
D A E+ N C+G +T LE + + T D T C + + SP+V NH
Sbjct: 441 DAASKENKENGCNGATVTVLEPDASSTSARPTPTDAPGKDVTTCSTK-AKSPEVQSASNH 499
Query: 294 TGNPVMSQHT 323
T N S +T
Sbjct: 500 TTNNAASVNT 509
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 225 LDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTH 326
+D + P I + +PNY + G P+ QH H
Sbjct: 1 MDPRARYPPGIGNGRGGNPNYYNRGPPLQQQHNH 34
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 153 CDGDFMTKLEQELTFVDNTNETGLLDIDTKCKPEISSSP 269
C GD + +L V++TN +++D E+S++P
Sbjct: 556 CYGDVVVRLPSVSLPVESTNRENTMELDNVNSTEVSATP 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,538,725
Number of Sequences: 37544
Number of extensions: 286536
Number of successful extensions: 800
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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