Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o09f
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr...    34   0.059
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical pr...    31   0.42 
Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    29   1.7  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    28   3.9  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    27   6.8  

>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
           protein F56C9.10b protein.
          Length = 1031

 Score = 34.3 bits (75), Expect = 0.059
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +3

Query: 222 LLDIDTKCKPEISSSPQV--SPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFN 395
           LLD  +  K  +SS P V  SP  +    PV+++ T     +PP    ++   ++ E+  
Sbjct: 86  LLDFSSSDKSSLSSRPNVKDSPEEDEDAVPVVNRTTTSPPTSPPSQTAVEQDSLQAEEML 145

Query: 396 LPTSLENASVTFPEVIPQQRT 458
           +  SL++A    P   P QR+
Sbjct: 146 VDMSLDDAPAAPPRK-PHQRS 165


>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
           protein F56C9.10a protein.
          Length = 1028

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = +3

Query: 222 LLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLP 401
           LLD  +  K  +SS P  SP  +    PV+++ T     +PP    ++   ++ E+  + 
Sbjct: 86  LLDFSSSDKSSLSSRPD-SPEEDEDAVPVVNRTTTSPPTSPPSQTAVEQDSLQAEEMLVD 144

Query: 402 TSLENASVTFPEVIPQQRT 458
            SL++A    P   P QR+
Sbjct: 145 MSLDDAPAAPPRK-PHQRS 162


>Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical
           protein F55H12.6b protein.
          Length = 286

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
 Frame = +3

Query: 180 EQELTFVDNTNETGLLDIDTKCKPEISSSPQVSPNY-------NHTGNPVMSQHTHRIRP 338
           +QE   +D  NE  L D D     +  SS Q+  N+        +  N V+ +  HRI P
Sbjct: 64  KQETLSIDTNNEINLRDDDDFMMMKEFSSNQILVNFLSQLDLPTNDVNRVLGKR-HRISP 122

Query: 339 TPPISKTIQGGYIKE---EKFNLPTSLENASVTFPEVIPQQRTQVQ 467
           TP I+ ++      E   + FN   +L+N  +     I Q+  + Q
Sbjct: 123 TPTINSSVTPNEEHEPDLKMFNSGDTLQNFLIDIDNHIRQKNQESQ 168


>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 2   VNKNNFQKHLIKFLLWFYGLRIVKNGY*SFYEC--GRFQCP-RHC 127
           VNK N  KH+I  +  ++   +  N Y  F+EC  G  +C  RHC
Sbjct: 153 VNKKNKNKHMIDIVCKYFLEAVENNKYGWFWECPNGGEKCQYRHC 197


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +3

Query: 264 SPQVSPNYNHTGNPVMSQHTHRIRPTPPISKTIQGGYIKEEKF-NLPTSLENASVTFPEV 440
           SPQ+S   N+    +M+  T  + P PP    I G         NL    +N   T PE 
Sbjct: 520 SPQMSQQRNYPQLQMMASQTPSMAPLPPPMPPIVGSSSAISSIQNLLEKQQNQYETAPET 579

Query: 441 IPQQRTQVQNQPMIFQQVVQSPVFV 515
            P+   Q      I +QVV   V V
Sbjct: 580 -PRWDRQEPEYQHIDEQVVAPDVVV 603


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 246 KPEISSSPQVS--PNYNHTGNPVMSQHTHRIR-PTPPISKTIQGGYIKEEK 389
           K +I S P  S  P++++  N    QH   I+ P PPI+KTI+    + EK
Sbjct: 246 KRDIISPPMYSSTPHHHNHHNHQQLQHHQVIKSPQPPITKTIEVKVERSEK 296


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 225  LDIDTKCKPEISSSPQVSPNYNHT---GNP-VMSQHTHRIRPTPP 347
            L I ++ K   SSS  ++PNY+ T   GNP  M    + I+P PP
Sbjct: 1577 LTIGSEKKNNQSSSSALNPNYDFTRTPGNPNRMQMSQNSIQPAPP 1621


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 120 DIAEIEDFLNNCDGDFMTKLEQELTFVDNTNETGLLDIDTKCKPEISS 263
           D++++E    N   D +T     +TFVDNT+    ++ +  C  E SS
Sbjct: 97  DVSDLESVWKNVKPDELTYNRLVVTFVDNTDSKSNIECEI-CTLEFSS 143


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +3

Query: 324 HRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQV-----QNQPMIFQ 488
           HR++PT P++ T        ++   PT L  AS +FP   P     +     QN P IF 
Sbjct: 254 HRLQPTTPLTSTETSSPFFLDQSVRPTQLAVAS-SFPAQTPLHNEPLPPPVTQNSPSIFS 312

Query: 489 QVV 497
            ++
Sbjct: 313 NIM 315


>Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical
           protein AH10.3 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 244 HFVSMSNSPVSFVLSTKVSSCSNFVIKSPSQLFKKSSISAMSWTLKTSAFIKGSISIF 71
           +F  +SN P+ ++L      CS   I     L KK  + ++ W+     F   SIS F
Sbjct: 135 NFARLSNFPIGYILCQHCVCCSIITISKVEPLIKK-FLQSLFWSPPPPQFT--SISTF 189


>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +3

Query: 303 PVMSQHTHRIRPTPPISKTIQGGYIKEEKFNLPTSLENASVTFPEVIPQQRTQVQNQPMI 482
           P +  +T ++RP PP++  I G    EE F      E +    PE++  ++   + +P  
Sbjct: 81  PGLVDYTRQVRPFPPMNSEIHG----EEYFG-----EKSKENVPEILGIEKKPRRKRP-- 129

Query: 483 FQQVVQSPVF 512
             ++V+ PVF
Sbjct: 130 -ARLVEFPVF 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,135
Number of Sequences: 27780
Number of extensions: 276214
Number of successful extensions: 810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)