Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o09f
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   0.89 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   0.89 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +3

Query: 81  IDPFMNADVFNVHDIAEIEDFLNNCDGDFMTKLEQELTFV 200
           + PF    +  V      E FL  C  DF+T  E    FV
Sbjct: 182 VTPFTVLPLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFV 221


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +3

Query: 81  IDPFMNADVFNVHDIAEIEDFLNNCDGDFMTKLEQELTFV 200
           + PF    +  V      E FL  C  DF+T  E    FV
Sbjct: 182 VTPFTVLPLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFV 221


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 246 CISYQCPTALFHLYCPQK*VPVLILS 169
           C++  CPT  +  Y      P+L+LS
Sbjct: 259 CVAQACPTPEYRWYAQTGSEPMLVLS 284


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 246 CISYQCPTALFHLYCPQK*VPVLILS 169
           C++  CPT  +  Y      P+L+LS
Sbjct: 259 CVAQACPTPEYRWYAQTGSEPMLVLS 284


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 120 DIAEIEDFLNNCDGDFMTKLEQELTF 197
           DI  +  +LN   GDF T  E ++TF
Sbjct: 202 DIINVPAYLNTYKGDFPT--ETDITF 225


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 499 RAPCLLIWVRLEISNLCL 552
           R PC  + V L +S+LC+
Sbjct: 73  RRPCNYLLVSLAVSDLCV 90


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 222 LLDIDTKCKPEISSSPQVSPNYNH 293
           L D     KP+I   P +SP+  H
Sbjct: 731 LTDTVLAYKPKILGKPTISPDSRH 754


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,324
Number of Sequences: 438
Number of extensions: 3787
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)