Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o08r
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.1  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   2.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   6.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 159 VTVVSPNPSSKRRQKPLRKLCSVLSVPIAR*DHRLH*RD 43
           V +VS   ++ R+  PL+KLC+  +       HR H  D
Sbjct: 136 VEMVSCKDAALRKVVPLKKLCNNGTCEDIGNSHRCHCSD 174


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = -1

Query: 310 TNSKMVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGR 185
           T  K++    Q+R               QYKK  E H A  R
Sbjct: 84  TAEKVIRHLTQKRARDWERLSKKYDPQGQYKKRYEEHVATSR 125


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +3

Query: 216 FLYCDT--LCTLWHLHFLQYVLRCFGT 290
           F+ C+   +  LW   FL ++L C  T
Sbjct: 133 FITCELFFVILLWISFFLNFMLHCNNT 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,976
Number of Sequences: 336
Number of extensions: 1585
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)