Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o08r
(340 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 120 4e-28
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 62 8e-11
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.32
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2) 25 1.6
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066) 27 2.9
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 2.9
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 27 2.9
SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_48686| Best HMM Match : rve (HMM E-Value=1.2e-19) 27 2.9
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15) 27 3.9
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 27 5.1
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26) 27 5.1
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12) 27 5.1
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6) 27 5.1
SB_23678| Best HMM Match : Complex1_30kDa (HMM E-Value=6.8) 26 6.8
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_28235| Best HMM Match : rve (HMM E-Value=2.7e-11) 26 6.8
SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 26 9.0
SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20) 26 9.0
SB_15116| Best HMM Match : rve (HMM E-Value=5.8e-17) 26 9.0
SB_7514| Best HMM Match : OATP (HMM E-Value=0) 26 9.0
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 26 9.0
SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13) 26 9.0
SB_5506| Best HMM Match : rve (HMM E-Value=0.00062) 26 9.0
SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14) 26 9.0
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_24346| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 26 9.0
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 120 bits (288), Expect = 4e-28
Identities = 59/103 (57%), Positives = 69/103 (66%), Gaps = 2/103 (1%)
Frame = -1
Query: 304 SKMVNVPKQRRTYXXXXX--XXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIF 131
S +VNVPKQR+T+ V+QYK K AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 6 SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65
Query: 130 XXXXXXXXKIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 2
KIVLR+EC CK R Q+ LKRCKHFELGGDKKRKG
Sbjct: 66 HKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKG 108
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 62.5 bits (145), Expect = 8e-11
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = -1
Query: 103 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 5
IVLR+EC CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 30.7 bits (66), Expect = 0.32
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = -2
Query: 315 AERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNP 136
AE +W T + + +K + + K R T P + D+ +R+T VSP
Sbjct: 1021 AESFHRWLTQRQFCAQYSKELASGKTNREWVTALPIV-----ISDINATKTRMTGVSPKD 1075
Query: 135 SSKRRQKPLRKLCSVLSVPI 76
+ K R+ PL+ L VP+
Sbjct: 1076 AIKLRRVPLKAEKPPLEVPL 1095
>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
Length = 474
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 67 RSQVALKRCKHFELGGD 17
+S++A RC H LGGD
Sbjct: 419 QSRIAFPRCAHGPLGGD 435
Score = 22.2 bits (45), Expect(2) = 1.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 214 SKERHAAQGRRRYDRKQQGYGGQSKPIF 131
++ RH + RRRY + G QS+ F
Sbjct: 397 AERRHNGRDRRRYGQPDSGDVRQSRIAF 424
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 91 LECADCKVRSQVALKRCKHFELG 23
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
Length = 716
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 157 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 279
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 167 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTPA 206
>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1359
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 157 NPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCA 279
+P + DH VFYP P TF + + I ++ ST+ A
Sbjct: 1172 HPILNDHGVFYPKALPHPLTF-EITLATVSDIVVYSSTTPA 1211
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 157 NPAVYDHNVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 279
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 1243 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTQA 1282
>SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 189 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 76
+ D+ N+R+T +P + K R+ PL+ L VP+
Sbjct: 676 ISDINATNTRMTGFAPKDAKKLRRVPLKAEKPPLEVPL 713
>SB_48686| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 722
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 189 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 76
+ D+ N+R+T +P + K R+ PL+ L VP+
Sbjct: 624 ISDINATNTRMTGFAPKDAKKLRRVPLKAEKPPLEVPL 661
>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
Length = 1575
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 231 YHSTKSPRK-GTLPRVEDV--MIVNSRVTVVSPNPSSKRRQK 115
Y + P+K G RV+++ ++ R T+ PN S RRQ+
Sbjct: 1011 YEAAWDPKKSGNTERVQELQGVVTTDRQTIDDPNTSESRRQE 1052
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 243 KYTRYHS-TKSPRKGTLPRVEDVMI--VNSRVTVVSPNPSSKRRQ 118
K TRY S T S R P ++ + +NS SP+PS+KR +
Sbjct: 2061 KSTRYSSRTSSNRDSRTPPADEKIRADINSNEVQSSPSPSTKREE 2105
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 192 WAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 287
W L F+ C TLC W + Y R G
Sbjct: 283 WIGAWWLGFVICGTLCIFWSIWLFGYPKRIPG 314
>SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)
Length = 458
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 219 KSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVP 79
K PR+ L + + V++ NS T + ++ LR++C L++P
Sbjct: 61 KMPRESGLFKCQVVLLDNSTFTTSFEKRKETKGKELLRRVCIELNIP 107
>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
Length = 501
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 217 KSKERHAAQGRRRYDRKQQGY 155
K K+RHA Q YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 67 RSQVALKRCKHFELGGDKKR 8
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
Length = 399
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 181 VFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 288
VFYP P V+ C+ + + C C +LV
Sbjct: 105 VFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLV 140
>SB_23678| Best HMM Match : Complex1_30kDa (HMM E-Value=6.8)
Length = 207
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 189 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 76
VED+ +R+T +P + K R+ PL+ L VP+
Sbjct: 53 VEDINATKTRMTGFAPKDAIKLRRVPLKAEKPPLMVPL 90
>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 67 RSQVALKRCKHFELGGD 17
RS++A RC H LGGD
Sbjct: 504 RSRIAFTRCAHGPLGGD 520
>SB_28235| Best HMM Match : rve (HMM E-Value=2.7e-11)
Length = 188
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 201 TLPRV-EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 76
TLP V D+ +R+T ++P + K R+ PL+ L VP+
Sbjct: 127 TLPIVISDINATKTRMTGLAPEDAIKLRRVPLKAERPPLEVPL 169
>SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 26.2 bits (55), Expect = 6.8
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 291 TYQNSAGRTAKNVNATKYTRYHSTKSPR----KGTLPRVEDV--MIVNSRVTVVSPNPSS 130
T +S G + T +T K+ R G RV+++ ++ R T+ PN S
Sbjct: 43 TSTSSRGARTQTTAETSFTTEGRCKAKRLQAVDGVTERVQELQGVVATDRETIDDPNTSE 102
Query: 129 KRRQK 115
RRQ+
Sbjct: 103 SRRQE 107
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 220 CTVIPCVLCGIYIFCSTSCAVLVRSPFLS 306
CTV PCVL G C+ +C VL P S
Sbjct: 2123 CTVNPCVLNG---GCTHTCTVLDGKPVCS 2148
>SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 663
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 9 LFLSPPSSKCLHLFNATCDLTLQSAHSRRS 98
L L+ S+C ++ CD Q HSRR+
Sbjct: 362 LMLTTYGSQCKAIYEQPCDPRPQEGHSRRT 391
>SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20)
Length = 392
Score = 25.8 bits (54), Expect = 9.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 115 FLPSF*RWVWTDHRNPAVYDHN 180
+ P +WVW +H NP +N
Sbjct: 123 YKPKDQKWVWYEHENPVKMSNN 144
>SB_15116| Best HMM Match : rve (HMM E-Value=5.8e-17)
Length = 317
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 222 TKSPRKGTLPRV-EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 76
T S TLP V D+ +R+T ++P + K R+ PL+ L VP+
Sbjct: 203 TNSEWVTTLPIVISDMNATKTRMTGLAPEDAIKLRRVPLKAEKPPLEVPL 252
>SB_7514| Best HMM Match : OATP (HMM E-Value=0)
Length = 763
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 192 WAACLSLDFLYCDTLCTLWHL 254
W L F+ C TLC W L
Sbjct: 331 WVGAWWLGFVVCGTLCIFWSL 351
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 285 QNSAGRTAKNVNATKYTRYH 226
+NS+GRT KN++AT H
Sbjct: 141 KNSSGRTCKNISATHKLSLH 160
>SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1606
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 189 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 76
+ D+ +RVT ++P + K R+ PL+ L VP+
Sbjct: 1186 ISDMNATKTRVTGLAPEDAIKLRRVPLKAKKPPLEVPL 1223
>SB_5506| Best HMM Match : rve (HMM E-Value=0.00062)
Length = 390
Score = 25.8 bits (54), Expect = 9.0
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 267 TAKNVNATKYTRYHSTKSPRKGTLPRV-EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSV 91
T + V +K T TLP V D+ +R+T ++P + K R+ PL+
Sbjct: 158 TDRGVEYSKELASGKTNREWVTTLPIVISDMNATKTRMTGLAPEDAIKLRRVPLKAEKPP 217
Query: 90 LSVPI 76
L VP+
Sbjct: 218 LEVPL 222
>SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14)
Length = 594
Score = 25.8 bits (54), Expect = 9.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 121 PSF*RWVWTDHRNPA 165
P+ +WVW +H NPA
Sbjct: 306 PARQKWVWYEHENPA 320
>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1564
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 198 LPRVEDVMIVNSRVT--VVSPNPSSKRRQKPLRKLCSVLS 85
+ +VE++++ + +V V +P+P+ R P LC +LS
Sbjct: 382 ISKVEELLVASCKVPEKVNAPSPAQTLRSLPRVSLCYILS 421
>SB_24346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 25.8 bits (54), Expect = 9.0
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -2
Query: 315 AERTQKW*TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNP 136
AE +W T + + +K++ + K R T P + D+ +R+T +P
Sbjct: 37 AESFHRWLTQRLFRAQYSKDLASGKTNREWVTALPIV-----ISDINATKTRMTGFAPKH 91
Query: 135 SSKRRQKPLRKLCSVLSVPI 76
+ K R+ PL+ L VP+
Sbjct: 92 AIKLRRVPLKAEKPPLEVPL 111
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 225 STKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVP 79
+ K P K T+P ED ++ +V + S ++ PLR + S SVP
Sbjct: 191 NNKDPVK-TIPNKEDNASLSRTRSVYDNDSLSSDKKDPLRPMISYRSVP 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,820,810
Number of Sequences: 59808
Number of extensions: 225130
Number of successful extensions: 1028
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -