Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12o08f
(445 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q969Q0 Cluster: 60S ribosomal protein L36a-like; n=88; ... 130 1e-29
UniRef50_P83881 Cluster: 60S ribosomal protein L36a; n=44; Fungi... 129 2e-29
UniRef50_P48166 Cluster: 60S ribosomal protein L44; n=79; Eukary... 127 9e-29
UniRef50_A7P2V5 Cluster: Chromosome chr1 scaffold_5, whole genom... 114 7e-25
UniRef50_A2DAI6 Cluster: 60S ribosomal protein L44, putative; n=... 76 3e-13
UniRef50_Q3LWA2 Cluster: Ribosomal protein L44; n=1; Bigelowiell... 72 6e-12
UniRef50_O15576 Cluster: Ribosomal protein L44; n=1; Entamoeba h... 64 2e-09
UniRef50_A3BKG6 Cluster: Putative uncharacterized protein; n=1; ... 55 8e-07
UniRef50_Q9YF00 Cluster: 50S ribosomal protein L44E; n=15; Therm... 51 1e-05
UniRef50_A0RZ36 Cluster: Ribosomal protein L44E; n=1; Cenarchaeu... 50 2e-05
UniRef50_Q5KA45 Cluster: Putative uncharacterized protein; n=1; ... 50 3e-05
UniRef50_Q9HIX1 Cluster: 50S ribosomal protein L44E; n=5; Archae... 44 0.001
UniRef50_A3BKG7 Cluster: Putative uncharacterized protein; n=1; ... 36 0.30
UniRef50_O59603 Cluster: 50S ribosomal protein L44E; n=15; Eurya... 36 0.30
UniRef50_Q3AV77 Cluster: Possible peptidase S26 family protein; ... 35 0.69
UniRef50_Q4T3I8 Cluster: Chromosome undetermined SCAF10033, whol... 33 3.7
UniRef50_UPI0000DB703D Cluster: PREDICTED: similar to ubiquitin ... 32 4.8
UniRef50_Q00TJ9 Cluster: Chromosome 17 contig 1, DNA sequence; n... 32 4.8
UniRef50_Q17E08 Cluster: Putative uncharacterized protein; n=1; ... 32 4.8
UniRef50_Q9DB68 Cluster: Adult male cerebellum cDNA, RIKEN full-... 32 6.4
UniRef50_P39940 Cluster: E3 ubiquitin-protein ligase RSP5; n=31;... 32 6.4
UniRef50_Q0IMZ5 Cluster: Os12g0524600 protein; n=20; Oryza sativ... 31 8.5
UniRef50_Q5CQT1 Cluster: Large low complexity protein with signa... 31 8.5
>UniRef50_Q969Q0 Cluster: 60S ribosomal protein L36a-like; n=88;
Eukaryota|Rep: 60S ribosomal protein L36a-like - Homo
sapiens (Human)
Length = 106
Score = 130 bits (315), Expect = 1e-29
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +1
Query: 43 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 222
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 223 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 354
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>UniRef50_P83881 Cluster: 60S ribosomal protein L36a; n=44;
Fungi/Metazoa group|Rep: 60S ribosomal protein L36a -
Homo sapiens (Human)
Length = 106
Score = 129 bits (312), Expect = 2e-29
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +1
Query: 43 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 222
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 223 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 354
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>UniRef50_P48166 Cluster: 60S ribosomal protein L44; n=79;
Eukaryota|Rep: 60S ribosomal protein L44 -
Caenorhabditis elegans
Length = 105
Score = 127 bits (307), Expect = 9e-29
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +1
Query: 43 MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 219
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 220 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 354
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>UniRef50_A7P2V5 Cluster: Chromosome chr1 scaffold_5, whole genome
shotgun sequence; n=9; Eukaryota|Rep: Chromosome chr1
scaffold_5, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 151
Score = 114 bits (275), Expect = 7e-25
Identities = 55/100 (55%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Frame = +1
Query: 46 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 219
VNVPK ++TY +QYKK K+ AAQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 48 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 107
Query: 220 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 339
IVLRL+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 108 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 147
>UniRef50_A2DAI6 Cluster: 60S ribosomal protein L44, putative; n=1;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L44,
putative - Trichomonas vaginalis G3
Length = 104
Score = 76.2 bits (179), Expect = 3e-13
Identities = 38/98 (38%), Positives = 52/98 (53%)
Frame = +1
Query: 43 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 222
MV+ PK ++ + SQ + +ERH+A GRRRYDRKQ+G+GG+ KPI
Sbjct: 1 MVHHPKTKKFFCKFCKKHTMCKVSQASRGEERHSALGRRRYDRKQKGFGGRVKPILRRSK 60
Query: 223 XXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRK 336
I LR C CK + L R + FE +KK+K
Sbjct: 61 KTSKKISLRFTCQSCKKATMYCLGRLRKFEWTVEKKKK 98
>UniRef50_Q3LWA2 Cluster: Ribosomal protein L44; n=1; Bigelowiella
natans|Rep: Ribosomal protein L44 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 99
Score = 71.7 bits (168), Expect = 6e-12
Identities = 35/91 (38%), Positives = 47/91 (51%)
Frame = +1
Query: 43 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 222
MV P+ ++ Y +YK K AQG+RRYDRKQQGYGGQ+KP+F
Sbjct: 1 MVKYPRNQKKYCKFCKVHVEMKSYEYKPGKASLNAQGKRRYDRKQQGYGGQTKPVFRKQV 60
Query: 223 XXXXXIVLRLECADCKVRSQVALKRCKHFEL 315
++L C CK +LKR K F++
Sbjct: 61 KNTKKPSIKLSCEICKKEFIKSLKRTKRFQI 91
>UniRef50_O15576 Cluster: Ribosomal protein L44; n=1; Entamoeba
histolytica|Rep: Ribosomal protein L44 - Entamoeba
histolytica
Length = 80
Score = 63.7 bits (148), Expect = 2e-09
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = +1
Query: 115 QYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALK 294
QYKK K+ QG+RRYDRKQQG+GGQ+KP+F + ++EC CK+ +
Sbjct: 9 QYKKGKDSLHVQGKRRYDRKQQGFGGQTKPVFKKKAKQQRRL-FKIECTKCKIAQSLRES 67
Query: 295 RC 300
C
Sbjct: 68 TC 69
>UniRef50_A3BKG6 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 89
Score = 54.8 bits (126), Expect = 8e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1
Query: 238 IVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 339
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 52 IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 85
>UniRef50_Q9YF00 Cluster: 50S ribosomal protein L44E; n=15;
Thermoprotei|Rep: 50S ribosomal protein L44E - Aeropyrum
pernix
Length = 95
Score = 50.8 bits (116), Expect = 1e-05
Identities = 30/87 (34%), Positives = 37/87 (42%)
Frame = +1
Query: 55 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXX 234
PK+ RTY +QY+ K R A G RRY RKQ+GYG Q +P
Sbjct: 4 PKRIRTYCPRCNTHTEHRVAQYRAGKRRAMALGERRYRRKQEGYGSQRRPEQKRFAKVTK 63
Query: 235 XIVLRLECADCKVRSQVALKRCKHFEL 315
VL + C C + R K EL
Sbjct: 64 KQVLVITCTVCGRKRPFLGIRLKRLEL 90
>UniRef50_A0RZ36 Cluster: Ribosomal protein L44E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L44E - Cenarchaeum
symbiosum
Length = 93
Score = 50.0 bits (114), Expect = 2e-05
Identities = 29/86 (33%), Positives = 35/86 (40%)
Frame = +1
Query: 55 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXX 234
PKQ R Y S YK K R +A G RR+ ++GYGGQ P
Sbjct: 4 PKQIRRYCPKCKKHTTQKVSIYKAGKRRASAIGERRHAEDKKGYGGQKFPKLAKPAKVTK 63
Query: 235 XIVLRLECADCKVRSQVALKRCKHFE 312
+ L C DCK + R K FE
Sbjct: 64 KVTRLLTCPDCKKKFNTYGLRVKKFE 89
>UniRef50_Q5KA45 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 147
Score = 49.6 bits (113), Expect = 3e-05
Identities = 35/79 (44%), Positives = 43/79 (54%)
Frame = +2
Query: 92 ATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPIAR 271
+T TR ST+ R P+ D ++ VTVV P+ SS RR +P R+L SV S AR
Sbjct: 24 STPPTRLPSTRRARTLFPPKESDDTTESNPVTVVRPSLSSTRRLRPPRRLSSVSSALSAR 83
Query: 272 *DHRLH*RDASTLSSVVTR 328
DAST SSVVTR
Sbjct: 84 PSTNSPSSDASTSSSVVTR 102
>UniRef50_Q9HIX1 Cluster: 50S ribosomal protein L44E; n=5;
Archaea|Rep: 50S ribosomal protein L44E - Thermoplasma
acidophilum
Length = 93
Score = 44.0 bits (99), Expect = 0.001
Identities = 26/90 (28%), Positives = 36/90 (40%)
Frame = +1
Query: 46 VNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXX 225
+ +PK+ TY + +K K G+RR+ R GYGG +P F
Sbjct: 1 MKMPKKIMTYCPYCKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREK 60
Query: 226 XXXXIVLRLECADCKVRSQVALKRCKHFEL 315
I LRL C +C R K FE+
Sbjct: 61 PTKRIALRLVCDECHKAITPPGIRAKKFEI 90
>UniRef50_A3BKG7 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 76
Score = 36.3 bits (80), Expect = 0.30
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 286 ALKRCKHFELGGDKKRKG 339
+++RCKHFE+GGDKK KG
Sbjct: 55 SVQRCKHFEIGGDKKGKG 72
>UniRef50_O59603 Cluster: 50S ribosomal protein L44E; n=15;
Euryarchaeota|Rep: 50S ribosomal protein L44E -
Pyrococcus horikoshii
Length = 94
Score = 36.3 bits (80), Expect = 0.30
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +1
Query: 55 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXX 234
PKQ RTY + K+ + G+RR+ R +GYGG +P
Sbjct: 4 PKQIRTYCPYCKRHTIHKVERVKRRPRSELSAGQRRFRRVLKGYGGFPRPKPEGREKPVK 63
Query: 235 XIVLRLECADC-KVRSQVALKRCKHFEL 315
+ LR C C + ++ R K FEL
Sbjct: 64 KLDLRFVCTVCGRAHTRGKGFRVKRFEL 91
>UniRef50_Q3AV77 Cluster: Possible peptidase S26 family protein;
n=2; Synechococcus|Rep: Possible peptidase S26 family
protein - Synechococcus sp. (strain CC9902)
Length = 127
Score = 35.1 bits (77), Expect = 0.69
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 116 STKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKL 241
ST S + G +PR + +V SRVT NPS+K QK +L
Sbjct: 80 STDSRQLGPIPRSALIGVVTSRVTPAKKNPSTKTNQKSQNQL 121
>UniRef50_Q4T3I8 Cluster: Chromosome undetermined SCAF10033, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF10033,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1494
Score = 32.7 bits (71), Expect = 3.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 253 QDGAQFS*WFLPSF*RWVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVL 98
++G F P W+W D+ N + D N+F F W C+ IP L
Sbjct: 49 ENGKDFRFDVSPDLLEWIWHDN-NQFLQDKNIFEHTYFGFMWQLCSSIPSSL 99
>UniRef50_UPI0000DB703D Cluster: PREDICTED: similar to ubiquitin
specific protease 34; n=1; Apis mellifera|Rep: PREDICTED:
similar to ubiquitin specific protease 34 - Apis
mellifera
Length = 3414
Score = 32.3 bits (70), Expect = 4.8
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 205 WVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLVRSPFLSSF 29
W+W D+ + + D N+F F W C IP L I + A L S F+ +F
Sbjct: 2236 WIWQDNMH-FLQDKNIFEHTYFTFMWQICGYIPQTLFSIQSDITEMSADLSTSFFMETF 2293
>UniRef50_Q00TJ9 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 66
Score = 32.3 bits (70), Expect = 4.8
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -3
Query: 137 LSLDFLYCDTLCTLWHLHFLQYVLRCFGTF 48
L+L LYC TLC LH LQ V FGT+
Sbjct: 5 LALPVLYCVTLCAECFLHPLQNVFLDFGTY 34
>UniRef50_Q17E08 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 594
Score = 32.3 bits (70), Expect = 4.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 124 FCTVIPCVLCGIYIFCSTSC 65
F T+IPC C + +FCST C
Sbjct: 244 FLTLIPCKCCTVTMFCSTKC 263
>UniRef50_Q9DB68 Cluster: Adult male cerebellum cDNA, RIKEN
full-length enriched library, clone:1500005N04
product:SIMILAR TO MAMMALIAN INOSITOL HEXAKISPHOSPHATE
KINASE 2 homolog; n=2; Murinae|Rep: Adult male
cerebellum cDNA, RIKEN full-length enriched library,
clone:1500005N04 product:SIMILAR TO MAMMALIAN INOSITOL
HEXAKISPHOSPHATE KINASE 2 homolog - Mus musculus (Mouse)
Length = 262
Score = 31.9 bits (69), Expect = 6.4
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 350 WIICPFLFL---SPPSSKCLHLFNATCDLTLQSAHSRRS 243
WI+C FL L S PS +CLHL C L SA + S
Sbjct: 215 WIVCCFLLLCLPSLPSPQCLHLRAHPCSLQSGSALKQAS 253
>UniRef50_P39940 Cluster: E3 ubiquitin-protein ligase RSP5; n=31;
Dikarya|Rep: E3 ubiquitin-protein ligase RSP5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 809
Score = 31.9 bits (69), Expect = 6.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 59 NSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVM 166
N++ T N ++T TR HST P +GT VE +
Sbjct: 158 NTSSTTRTNGHSTSSTRNHSTSHPSRGTAQAVESTL 193
>UniRef50_Q0IMZ5 Cluster: Os12g0524600 protein; n=20; Oryza sativa
(japonica cultivar-group)|Rep: Os12g0524600 protein -
Oryza sativa subsp. japonica (Rice)
Length = 1425
Score = 31.5 bits (68), Expect = 8.5
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 125 SPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL--RKLCSVLSVP 262
SPR PR+ +VN R VSP+ +RR +PL R C+ LS P
Sbjct: 868 SPRHRLRPRLR---VVNPRAGRVSPSSKDRRRSRPLAVRLRCARLSPP 912
>UniRef50_Q5CQT1 Cluster: Large low complexity protein with signal
peptide, within large locus of signal peptide containing
proteins; n=3; Cryptosporidium|Rep: Large low complexity
protein with signal peptide, within large locus of
signal peptide containing proteins - Cryptosporidium
parvum Iowa II
Length = 2929
Score = 31.5 bits (68), Expect = 8.5
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 56 QNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKR 217
+ S G ++N N + + HS + P+K LP+ ++ + + + +P +KR
Sbjct: 357 ETSEGEVSENENGKRNNKRHSKRRPKKPKLPKKWEIFTDDEKQEWLDRHPRTKR 410
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,706,646
Number of Sequences: 1657284
Number of extensions: 6737138
Number of successful extensions: 18174
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18164
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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