Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o03f
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   0.34 
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    26   1.8  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   5.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    24   9.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   9.5  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    24   9.5  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    24   9.5  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 29  VMLRSVLFLTTGFLFAACLTSVMSDKPTTKPICEQAFGNSGPCFAYIKLY 178
           +++  + F   GFLF   L S++  KP    +   A  ++  CF +I LY
Sbjct: 145 LIIDHIHFQYNGFLFGLLLWSIVLAKPEKNMLLSAAIFSALICFKHIFLY 194


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 380 PIYIFNSFYTKLHRFIHQLEKRACVNSKVSVT 285
           P+ I NS  TK+H+F+  L ++      ++VT
Sbjct: 376 PVEISNSNVTKIHKFLDTLGRQVFTYEALNVT 407


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 89  SVMSDKPTT-KPICEQAFGNSGPCFAYIKLYSYNQKTKKCEEFIYGGCKGNDN 244
           SV  + P + KP       +  P    +K +S  ++T      +YG CK ++N
Sbjct: 2   SVRKNSPASPKPTSRSRESSRSPSVTDLKDHSKAKRTLCRNILLYGSCKHSEN 54


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 86  TSVMSDKPTTKPICEQAFGNSGPCFAYIKLYSYNQKTKK 202
           TSV +      P+ ++      P F++ K+YS N K ++
Sbjct: 360 TSVSAGVGLFSPLAQKLSAVQNPEFSFTKVYSDNMKLQQ 398


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 143 CQKPARISASLLAYHS*LTSSTQRRESPW 57
           C + A I+ +LL +HS   +     E PW
Sbjct: 8   CFRRAVIALALLLFHSVFAAPYSEDEEPW 36


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 138 LAIRALVSPTLSYTRTIRRRRSVKNSFTEAARGTTIVSTH-WPNANRNA*SNRYLR 302
           L I     PT+S+ R + R   +KN     A    +VS H     +  A +NR +R
Sbjct: 290 LKIATADMPTVSWQRVLYRLLKLKNVNALTAEDGRVVSLHNMKRLDAYAIANRIMR 345


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 165 TLSYTRTI-RRRRSVKNSFTEAARGTTIVSTHWPNANRNA*SNRYLRINARS 317
           T S  +T  +R+RS +NSF    +  +  ++   N +++   NR L+  A S
Sbjct: 103 TASSNKTFSKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKENRALKDTATS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,114
Number of Sequences: 5004
Number of extensions: 29231
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)