Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o03f
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0329 - 16442298-16443734                                         29   0.99 
07_03_1125 - 24162298-24162586,24162730-24162783,24162940-241630...    29   1.3  
12_01_0580 + 4745639-4746528,4746666-4746747                           28   2.3  
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142...    27   4.0  
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080...    27   5.3  
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195           27   7.0  
01_06_0834 + 32302065-32302143,32303136-32303275,32303371-323034...    27   7.0  
10_01_0247 + 2594141-2594278,2595091-2595173,2595250-2595451,259...    26   9.2  
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708...    26   9.2  
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    26   9.2  

>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 39  DRCFS*PRAFSSLRAXXXXXXXXXXXXXYASRLLAIRALVSPTLSYTRTIRRRRSVKNSF 218
           DRC + PRA +++ A              ASRLLA  A +SP  +  R +       NSF
Sbjct: 26  DRCAT-PRALAAVHAAMLVSGRLADDAFAASRLLAAHAALSPPGAVLRLLASLPCAPNSF 84


>07_03_1125 -
           24162298-24162586,24162730-24162783,24162940-24163035,
           24163149-24163190,24163688-24163756,24164262-24164284
          Length = 190

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 332 HQLEKRACVNSKVSVTLCISVRIRPMCRNDCRSPCSLRK 216
           HQ++K + V  +    L IS+ I P   ND    CS R+
Sbjct: 128 HQVDKDSLVRKQALYILRISLDIFPSSENDAAQQCSRRR 166


>12_01_0580 + 4745639-4746528,4746666-4746747
          Length = 323

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 34  VAIGAFPNHGLSLRCVLDVSHE**ANNEADMRAGFWQFGPLFRLH 168
           + +GA+P H L LRCV ++S E       +++A  W      RLH
Sbjct: 279 ITVGAYPGHRLQLRCV-ELSRE----KFGEVKARVWWEENKARLH 318


>04_04_1500 +
           34010819-34011016,34013267-34013308,34014195-34014204,
           34014526-34014586,34014621-34014678,34015266-34015412,
           34015643-34016205,34018942-34019728
          Length = 621

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 185 NQKTKKCEEFIYGGCKGNDNRFDTLAECEQK 277
           N KTK CE F+ G C   D       E EQ+
Sbjct: 587 NYKTKLCENFVKGTCTFGDRCHFAHGENEQR 617


>11_04_0158 +
           14207463-14207629,14207724-14207774,14207874-14208002,
           14209342-14209447,14209491-14209601,14210042-14210098,
           14210903-14211727
          Length = 481

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 335 IHQLEKRACVNSKVSVTLCISVRIRPMCR--NDCR 237
           +H+  +  C+NS  + ++  ++R RP CR  N C+
Sbjct: 31  LHEALRNVCLNSDWTYSVFWTIRPRPRCRGGNGCK 65


>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
          Length = 837

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 155 CFAYIKLYSYNQKTKKCEEFIYGGCKGNDNRFD 253
           C    +  S NQ T+ C     GGC GN +  D
Sbjct: 318 CLPGFEFSSANQTTQGCWRVRTGGCTGNSSNGD 350


>01_06_0834 +
           32302065-32302143,32303136-32303275,32303371-32303436,
           32303867-32303950,32304532-32304699,32305061-32305126,
           32306027-32306452
          Length = 342

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 26  DVMLRSVLFLTTGFLFAACLTSVMSDKPTTK----PICEQAFGNSG 151
           D +LR++L   +  +F     + +S  P+      P+CE AFG  G
Sbjct: 51  DALLRNILAFRSHQIFHGIKITKVSPGPSLNFCPYPLCESAFGQEG 96


>10_01_0247 +
           2594141-2594278,2595091-2595173,2595250-2595451,
           2595547-2595864
          Length = 246

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 365 NSFYTKLHRFIHQLEKRACVNSKVSVTLCISVRIRPMCRNDCRSPCSLRK 216
           N F+ ++ R +  ++K + V  +    L IS+ I P  +ND    CS ++
Sbjct: 131 NEFWDEIRRGL--VDKDSLVRKQALYILRISLDIFPSSKNDAAQQCSRKR 178


>07_03_1647 + 28370226-28370369,28370452-28370611,28370704-28370831,
            28372512-28372628,28372729-28372782,28372985-28373075,
            28373517-28373688,28374452-28374573,28374726-28374817,
            28375331-28375373,28375596-28375656,28376367-28376515,
            28376659-28376729,28376805-28376975,28377056-28377124,
            28377427-28377528,28377629-28377697,28378060-28378138,
            28378238-28378337,28378438-28378513,28378715-28378894,
            28379430-28379552,28379634-28379717,28380068-28380252,
            28380339-28380477,28380585-28380644,28380926-28381030,
            28381332-28381445
          Length = 1019

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 96   MTDVKHAAKRKPVVRKSTDRNMTSLIQY 13
            M D KHA ++      S  RNMT LIQ+
Sbjct: 973  MNDFKHAHEQVCASITSDSRNMTELIQW 1000


>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 150  PELPKACSHIGFVVGLSLMTDVKHAAKRKPVVRKSTD 40
            P+L +  +  G + G SL  D++HA+ RK    KS++
Sbjct: 1096 PQLTQGHASNGIISGRSLDDDLQHASGRKDSSLKSSN 1132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,462,155
Number of Sequences: 37544
Number of extensions: 176704
Number of successful extensions: 446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)