Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o01r
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    28   1.7  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   2.9  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    26   6.8  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.0  

>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +2

Query: 227 YTIVILKFFKNSKLTITACHVFTHL*KIFTTYCIK*THSQTHSFVVLERTKNNVINKLY* 406
           + + +++FF    +TI + H+       F T CI   +    +FV L  T   ++ + Y 
Sbjct: 292 FALFVVRFFA---ITIQSIHLGLWFCFFFLTACISALYILFGAFVALPSTLRALVEQRYY 348

Query: 407 SIHSL 421
           ++HS+
Sbjct: 349 TLHSI 353


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 268 YNYCLPCIYTFVENIYNLLY*INTFTDTLVRRTRTHEEQ 384
           Y Y    I+ ++ +++ L Y +NTF D  +++    ++Q
Sbjct: 301 YEYDPTKIFIYIASLFGLAYNLNTFPDNEIQKGIVQQKQ 339


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 106 SHDSCWNTNILFFGLRIIYIDCTVYCS 26
           SH   W   +++ GL I+ +    YCS
Sbjct: 140 SHSEIWGPIVIYVGLFILLLSAFNYCS 166


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 202 DSF*RHIALHNCHFKVLQ 255
           D F +H   H+CHF +L+
Sbjct: 140 DIFMKHATKHSCHFNILK 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,690
Number of Sequences: 5004
Number of extensions: 62701
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)