Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o01r
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467...    29   4.1  
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   5.4  
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431...    28   7.1  

>09_04_0174 +
           15346123-15346207,15346350-15346502,15346623-15346759,
           15346856-15347005,15347405-15347506,15347832-15347996,
           15348402-15348499,15348704-15348827,15349056-15349145,
           15349555-15349599,15350438-15350833
          Length = 514

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 126 WMKYFDIVTIHAGTPTFYFSD 64
           W + FD+V   A  PTFY SD
Sbjct: 273 WRELFDVVIAQANKPTFYNSD 293


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 504 LYILKPKLRLDILG--LLEHCVSCC 436
           +Y L P LR+D+LG  L+ H V CC
Sbjct: 723 MYALDPTLRVDLLGLSLICHSVVCC 747


>03_01_0581 +
           4310136-4310186,4310940-4311144,4311245-4311410,
           4312035-4312257,4312891-4312967,4313091-4313278,
           4313363-4313457,4313674-4313807,4313914-4314024,
           4314304-4314619,4314919-4315040,4315183-4315293,
           4315824-4316012,4316105-4316263,4316449-4316530,
           4317080-4317190
          Length = 779

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 140 TGAYAIITVFSLRHKINLKTKTHFKDTSLYTIVILKFFKNSKLTI 274
           TG     T+F     ++   + H K+T+    +I  FFK SKL++
Sbjct: 176 TGQVVYETMFVWNEFLSRAIRNHLKNTTWTVALIHGFFKQSKLSV 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,717,976
Number of Sequences: 37544
Number of extensions: 333374
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)