Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o01r
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    30   1.6  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    30   1.6  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    30   1.6  
Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 126 WMKYFDIVTIHAGTPTFYFSD*ELFILIVLFIVVTERENLS 4
           W KYF+  + + G  TFY  +  L  ++  F +VT   N S
Sbjct: 152 WKKYFEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFS 192


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 126 WMKYFDIVTIHAGTPTFYFSD*ELFILIVLFIVVTERENLS 4
           W KYF+  + + G  TFY  +  L  ++  F +VT   N S
Sbjct: 152 WKKYFEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFS 192


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 126 WMKYFDIVTIHAGTPTFYFSD*ELFILIVLFIVVTERENLS 4
           W KYF+  + + G  TFY  +  L  ++  F +VT   N S
Sbjct: 152 WKKYFEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFS 192


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 126 WMKYFDIVTIHAGTPTFYFSD*ELFILIVLFIVVTERENLS 4
           W KYF+  + + G  TFY  +  L  ++  F +VT   N S
Sbjct: 152 WKKYFEPTSKNRGDLTFYIIELALVTVVFFFTIVTGLFNFS 192


>Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical
           protein T23G11.6a protein.
          Length = 653

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 76  ECWCSSMNRDYVKIFHPNETFDWGLCNNNSL*FKTQNQFENQDSF*RHIALHNCHFKVLQ 255
           EC  +S++ D +K +   E  D   CN +++    +N FENQ    + + L     K L 
Sbjct: 383 ECGFTSISADQLKDYPKLEELDLSKCNISNI---VENTFENQKDSLKKLNLQKNKLKSLP 439

Query: 256 KL 261
            L
Sbjct: 440 NL 441


>Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical
           protein T23G11.6b protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 76  ECWCSSMNRDYVKIFHPNETFDWGLCNNNSL*FKTQNQFENQDSF*RHIALHNCHFKVLQ 255
           EC  +S++ D +K +   E  D   CN +++    +N FENQ    + + L     K L 
Sbjct: 383 ECGFTSISADQLKDYPKLEELDLSKCNISNI---VENTFENQKDSLKKLNLQKNKLKSLP 439

Query: 256 KL 261
            L
Sbjct: 440 NL 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,191
Number of Sequences: 27780
Number of extensions: 351049
Number of successful extensions: 586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)