Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12o01f
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 419  ATFAQFFGSASPFQEFFDLNGGG 487
            AT     G+ +P +E  D+NGGG
Sbjct: 1550 ATLTVTGGTIAPARELPDVNGGG 1572


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 364 EWSWWRSIIFLHVPRRPESNVRAVLWFGQPVPGILRSEWRWN 489
           E+  WR    ++  R+P +N  +V W          S W+WN
Sbjct: 144 EYYVWRDARIVNGTRQPPNNWLSVFW---------GSAWQWN 176


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 356 PYHPLGLLRRAHHK 315
           P HPL LLR A  K
Sbjct: 357 PKHPLDLLREADFK 370


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 356 PYHPLGLLRRAHHK 315
           P HPL LLR A  K
Sbjct: 357 PKHPLDLLREADFK 370


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 94  LDNLSTIYEILANNHNAKLNTSLQQYH 14
           L NL   Y+I +N+H  K N  +  Y+
Sbjct: 52  LQNLGASYDIESNSHQYK-NPIIVMYY 77


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +3

Query: 114 QYKSKWAKTTIKYWE*QKVLRTMTSRKPTENWH*SXXXXXXXXXAQRKGLKKWQKLMRFY 293
           +YK K  +    Y E +K+L   TSRK                  ++K  K  +K  R Y
Sbjct: 11  EYKEKDRRYEKLYNEKEKLLEERTSRK----------RYSRSREREQKSYKNERK-YRKY 59

Query: 294 RTRRKEKFMMRTAKK 338
           R R KE+   RT ++
Sbjct: 60  RERSKERSRDRTERE 74


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 221 HPDKNKAAGAEERFKEVAEAYEVLSDKKKRE 313
           H D+         F+E A +  +L DKK  E
Sbjct: 386 HDDRTLFFHPMSSFREFAVSTSILGDKKTAE 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,742
Number of Sequences: 438
Number of extensions: 4115
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)