Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n24r
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 86 4e-18
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 50 4e-07
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 49 6e-07
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 30 0.31
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 27 2.2
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.8
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 5.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 5.0
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 26 5.0
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 6.6
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 86.2 bits (204), Expect = 4e-18
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 22/266 (8%)
Frame = -3
Query: 744 NGKHVLCEKPLCLNYKPAESLIRFAKNKKLFLMEAVWSRFSPTYIAIEKEINSGKL-GDV 568
N K VLCEKPL +NY A L+ A+ + LF E W RF P A + ++ ++ GD
Sbjct: 104 NDKAVLCEKPLTINYPEALELVELARARNLFFAEGFWIRFYPIVKAAKTLLHEDRVCGDH 163
Query: 567 MFVEVNFGV-----PIVTVDRLRKKELGGSSVMDIGIYTLQFAQYIFKEEPK-------- 427
+ V+F + + RLR LG ++D+G+Y L +++ + ++PK
Sbjct: 164 FRLFVDFSQDFRFRELPSESRLRTVSLGAGVLLDMGVYPLTWSRLLLYDDPKNEKQEPTV 223
Query: 426 --KVTTVGGLNEDGVDIYETIILEYDGDRRAVLNVDS--RFKMWNK-ATVVGTNGH-ITI 265
T N D D + L + + S R KM + + G NG+ + I
Sbjct: 224 SSNALTFEDHNGDIGDYTTAVTLVFPKTESIAMLCTSMDRGKMSDDFLKLDGENGNQLFI 283
Query: 264 EDPFHFPEI--FINTDGTVEKFPLHKSSLPYNFRNSAGLVYQALEVEKCLKEGLIESPRM 91
+ P+ I G E F ++F ++ G Y+ V +CL + + E+P +
Sbjct: 284 SGDCYRPQSIKLIRASGETEVF-------DFSFDDATGFFYEQDAVAECLLKNMKEAPEI 336
Query: 90 SHKESLVLAKLEQTVRKQLGVYYDVD 13
H+E+L + +L +R+Q+ V Y D
Sbjct: 337 PHEETLKMMQLTDQIRRQINVTYPAD 362
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = -3
Query: 741 GKHVLCEKPLCLNYKPAESLIRFAKNKKLFLMEAVWSRFSPTYIAIEKEINSGKLGDVMF 562
GKHV+CEKP Y+ A+ L A++K L L R+ ++ +K I SG+LG V+
Sbjct: 92 GKHVVCEKPFTPTYEEAKELYELAESKSLLLAIYQNRRWDGDFLTAKKIIESGRLGQVVE 151
Query: 561 VEVNF 547
E +F
Sbjct: 152 FESHF 156
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 49.2 bits (112), Expect = 6e-07
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = -3
Query: 741 GKHVLCEKPLCLNYKPAESLIRFAKNKKLFLMEAVWSRFSPTYIAIEKEINSGKLGDVMF 562
GKHVLCEKP Y A+ L AK+K L L RF ++ ++ I +G+LG+V+
Sbjct: 92 GKHVLCEKPFTPTYGEAKELFDLAKSKNLMLTVYQNRRFDGDFLTAKECIENGRLGEVVQ 151
Query: 561 VE 556
E
Sbjct: 152 FE 153
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 474 IYTLQFAQYIFKEEPKKVTTVGGLNEDGVDIY 379
++ +F QY EP KVT VG + D D Y
Sbjct: 1252 LFLKKFLQYQSNTEPPKVTVVGSTSHDSQDAY 1283
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 159 GLVYQALEVEKCLKEGLIESPRMSHKESLVLAKLEQTVRKQLGV 28
G VY A E K G I + + HK LV +K+E+ VR+++ +
Sbjct: 101 GRVYLAKEK----KTGFIVALKTLHKSELVQSKIEKQVRREIEI 140
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 476 PMSITELPPNSFFLSLSTVTIGTPKLTSTNITSPNFPELISFSMAM*VGENLDQTASIRN 655
P + E P + +L TIGTPK++ + S F + +S S+ + + +R+
Sbjct: 578 PPYLNENPLRALYL---IATIGTPKISRPELLSSVFHDFLSKSLTVNPKQRPSSGELLRH 634
Query: 656 SFL 664
FL
Sbjct: 635 PFL 637
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 617 PTLPLKKKSIPGNWE 573
P L ++KKS+ GNWE
Sbjct: 596 PFLHIRKKSVDGNWE 610
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 387 DIYETIILE-YDGDRRAVLNVDSRFKMWNKATVVGTNGHITIED 259
DI E + LE Y G + VD+RFK+ +AT + HI +++
Sbjct: 514 DIAERLKLEGYYGPLCELFKVDNRFKVAVEATAGNSLFHIVVDN 557
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 533 TIGTPKLTSTNITSPNFPELISFSMAM*VGENLDQTASIRNS 658
TIG+ S+N++SP+ E + V ENL + + NS
Sbjct: 375 TIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQKRGLVTNS 416
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 497 PPNSFFLSLSTVTIGTPKLTSTNITSPNFPELI 595
PP+S VTI P + TNI P+ +++
Sbjct: 175 PPSSSIPRSKAVTIEDPSIVRTNIYDPSLDDVL 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,658
Number of Sequences: 5004
Number of extensions: 75047
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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