Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n24r
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    38   0.011
08_01_0777 - 7542478-7544988                                           30   2.3  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    29   3.9  
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580...    29   3.9  
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793...    28   9.1  
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897           28   9.1  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    28   9.1  

>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 735 HVLCEKPLCLNYKPAESLIRFAKNKKLFLME-AVWSRFSPTYIAIEKEINSGKLGDVMFV 559
           H+L EKPLC   +  + ++  AK +   L++  +  R+ P    +   + SG LG V  V
Sbjct: 158 HILVEKPLCTTVQDCQKVVEAAKQRSDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMV 217

Query: 558 EV 553
            +
Sbjct: 218 AI 219


>08_01_0777 - 7542478-7544988
          Length = 836

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = -3

Query: 669 KNKKLFLMEAVWSRFSPTYIAIEKEINSGKLGDVMFV---EVNFGVPIVTVDRLRKKELG 499
           +NK L +++ +WS     +  ++  ++SG  G V+ V    +N    + T++     EL 
Sbjct: 260 ENKYLLVLDDIWSDNVNDWEQLKNLLSSGGRGSVVVVTTRNMNVASVVKTLEPYYVPELS 319

Query: 498 GSSVMDIGIYTLQFAQYIFKEEPKKVT 418
               M +      F +Y F++E KK T
Sbjct: 320 FDECMQV------FIRYAFRDEEKKDT 340


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -3

Query: 210 KFPLHKSSLPYNFRNSAGLVYQALEVEKCLKEGLIESPRMSHKESLVLAKLEQTVRKQLG 31
           +F +  S   Y F   + ++  AL  +  L     E P ++   +  +AKL++TVR+   
Sbjct: 465 QFMMASSLFSYFFGMKSRILSPALPQQSYLSSA--ELPSLTDHVNEEVAKLDRTVRRITA 522

Query: 30  VYYDVDDQE 4
           V  D D++E
Sbjct: 523 VLVDADERE 531


>08_01_0673 -
           5805218-5805349,5805936-5806026,5806416-5806471,
           5806571-5806852,5806924-5807057,5807088-5807163,
           5807247-5807747,5808454-5809037,5809579-5809597
          Length = 624

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = -3

Query: 252 HFPEIFINTDGTVEKFPLHKSSLPYNFRNSAGLVYQALEVEKCLKEGLIESPRMSHKESL 73
           H PE+ ++ D    + P+++S LP         V  A    KC  E ++     + K  L
Sbjct: 279 HVPELTVSADAH-SRLPIYQSVLP---------VIPAYNTPKCSGELVLRVLCPAGKIGL 328

Query: 72  VLAK---LEQTVRKQLGVYYDVDDQE 4
           V+ K     +++RK+ G   DVDD +
Sbjct: 329 VIGKGGVTIKSIRKESGARIDVDDSK 354


>11_04_0306 +
           16176873-16177124,16178155-16179152,16179204-16179339,
           16179448-16179597,16179711-16179891,16181139-16181298,
           16182156-16182378
          Length = 699

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 320 LLSTLRTARLSPSYSKIIVS*MSTPSSFRPPTVVTFLGSSLNMY 451
           LL T +   +  SY+++++  ++TP    P  V+TF  + L +Y
Sbjct: 507 LLQTFKEDGVVKSYTEVLLVPLTTPDFSMPYNVITFTCTVLALY 550


>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
          Length = 922

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 558 EVNFGVPIVTVDRLRKKE-LGGSSVMDIGIYTLQFAQYIFK 439
           ++N G  +VT+ RLRK E LG    M +  ++ +   Y+FK
Sbjct: 659 QMNEGSKVVTISRLRKSEKLGTVKPMFLNNHSDEELSYLFK 699


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 223 ICINENFREMERILYCNMTVGANH 294
           IC NE++R + R+L CNM+    H
Sbjct: 710 IC-NESYRSLGRVLLCNMSKSIGH 732


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,664,435
Number of Sequences: 37544
Number of extensions: 446471
Number of successful extensions: 1029
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)