Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n24r
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    33   0.22 
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    33   0.22 
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    33   0.22 
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z92829-12|CAO82019.1|  255|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z49910-3|CAA90121.1|  179|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 396  DGVDIYETIILEYDGDRRAVLNVDSRFKMWNKATVVGTNGHITIEDPF-HFPEIFINTDG 220
            D   +Y  +     GDR A  N   RFK+WN+    G +G    +  F HFP++ I  + 
Sbjct: 1341 DATPLYWPLPSTMLGDRTASYNGFLRFKIWNEDNRRGLHGIRPDQQYFRHFPQVIIFGNN 1400

Query: 219  TVE 211
             +E
Sbjct: 1401 RIE 1403


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 396  DGVDIYETIILEYDGDRRAVLNVDSRFKMWNKATVVGTNGHITIEDPF-HFPEIFINTDG 220
            D   +Y  +     GDR A  N   RFK+WN+    G +G    +  F HFP++ I  + 
Sbjct: 1341 DATPLYWPLPSTMLGDRTASYNGFLRFKIWNEDNRRGLHGIRPDQQYFRHFPQVIIFGNN 1400

Query: 219  TVE 211
             +E
Sbjct: 1401 RIE 1403


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 396  DGVDIYETIILEYDGDRRAVLNVDSRFKMWNKATVVGTNGHITIEDPF-HFPEIFINTDG 220
            D   +Y  +     GDR A  N   RFK+WN+    G +G    +  F HFP++ I  + 
Sbjct: 1341 DATPLYWPLPSTMLGDRTASYNGFLRFKIWNEDNRRGLHGIRPDQQYFRHFPQVIIFGNN 1400

Query: 219  TVE 211
             +E
Sbjct: 1401 RIE 1403


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = +2

Query: 284 VPTTVAL--FHILNLLSTLRTARLSPSYSKIIVS*MSTPSSFRPPTVVTFLGSSLNMY*A 457
           VPTTV      ++   ST+ T   +   S+  V    T     P T  T L S+      
Sbjct: 387 VPTTVVTNPSTVVTAPSTVVTVPTTVMTSRSTVITTPTTGGSSPSTAGTSLASTA----V 442

Query: 458 NCSV*IPMSITELPPNSFFLSLSTVTIGTPKLTSTNITSP 577
                I  S T LP  S  LS+S+++  TP  ++   TSP
Sbjct: 443 TTETSIGSSSTPLPSQSTSLSMSSLSTYTPSSSTAGATSP 482


>Z92829-12|CAO82019.1|  255|Caenorhabditis elegans Hypothetical
           protein F10A3.17 protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -3

Query: 381 YETIILEYDGDRRAVLNVDSRFKMWNKATVV-GTNG--HITIEDPFHFPEIFIN 229
           +ETI L  +      LN  S+ + W KA ++   NG   I IE+ FHF +  I+
Sbjct: 126 FETIELSNNESMVGQLNEISKLEQWKKAKILNAANGKFEIPIENLFHFEKFTIS 179


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
           protein F57C7.4 protein.
          Length = 1484

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 732 VLCEKPLCLNYKPAESLIRFAKNKKLFLMEAVWSRFSP 619
           +L E P+CL    A   I+F  N K+ +++ V ++FSP
Sbjct: 271 ILGENPICLG-DGANVAIKFGANPKIGILQEVKTKFSP 307


>Z49910-3|CAA90121.1|  179|Caenorhabditis elegans Hypothetical
           protein F44G4.5 protein.
          Length = 179

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -3

Query: 708 LNYKPAESLIRFAKNKKLFLMEAVWSRF---SPTYIAIEK 598
           LNYKPAE+ +R A+    + ++A+   F    P +IA++K
Sbjct: 95  LNYKPAENTVRLARVPSQYQLDALSEIFVFDVPQHIAVKK 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,460,610
Number of Sequences: 27780
Number of extensions: 420398
Number of successful extensions: 1069
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)