Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n24f
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    97   2e-21
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    62   4e-11
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    57   2e-09
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   0.89 
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    27   2.7  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   3.6  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   3.6  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    26   3.6  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   4.7  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   6.2  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   6.2  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   8.3  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       25   8.3  

>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
 Frame = +3

Query: 102 IRWGIVTAGKISHDFVNAFNSYP--NKGDQVIAAVAART---KPEEFAKLHNIPI---VF 257
           I WG + AG I+  F       P  +K    I AVA R    +   FAK H  P     +
Sbjct: 11  IHWGFLGAGSIAAVFAKDLVGVPERHKVQHEIVAVATRDSEHRASSFAKNHCAPCKPKAY 70

Query: 258 DSYKALAESNEIDVAYIGALNPDHYNISKLFLENGKHVLCEKPLCLNYKQAESLIRFAKN 437
            SY+ L + +++D+ YI + +P HY + KL L N K VLCEKPL +NY +A  L+  A+ 
Sbjct: 71  GSYEELVKDDKVDIVYISSTHPQHYEVVKLALLNDKAVLCEKPLTINYPEALELVELARA 130

Query: 438 KKLFLMEAVWSRFSPTYIAIEKEINSGKL-GDVMFVEVNF 554
           + LF  E  W RF P   A +  ++  ++ GD   + V+F
Sbjct: 131 RNLFFAEGFWIRFYPIVKAAKTLLHEDRVCGDHFRLFVDF 170


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 38/115 (33%), Positives = 58/115 (50%)
 Frame = +3

Query: 201 AARTKPEEFAKLHNIPIVFDSYKALAESNEIDVAYIGALNPDHYNISKLFLENGKHVLCE 380
           A  T+ +  A   N+ +     + LA+SN I++  I      HY +    L  GKHVLCE
Sbjct: 40  ATSTESKARAAFPNVKVYTKLDELLADSN-IELVVISLPPNVHYEVVSQALNAGKHVLCE 98

Query: 381 KPLCLNYKQAESLIRFAKNKKLFLMEAVWSRFSPTYIAIEKEINSGKLGDVMFVE 545
           KP    Y +A+ L   AK+K L L      RF   ++  ++ I +G+LG+V+  E
Sbjct: 99  KPFTPTYGEAKELFDLAKSKNLMLTVYQNRRFDGDFLTAKECIENGRLGEVVQFE 153


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 35/105 (33%), Positives = 55/105 (52%)
 Frame = +3

Query: 240 NIPIVFDSYKALAESNEIDVAYIGALNPDHYNISKLFLENGKHVLCEKPLCLNYKQAESL 419
           NI +  +  + LA+ N I++  +      H  I K  L  GKHV+CEKP    Y++A+ L
Sbjct: 53  NILVYTNLDELLADVN-IELVVVSLPPNVHSEIVKKALNAGKHVVCEKPFTPTYEEAKEL 111

Query: 420 IRFAKNKKLFLMEAVWSRFSPTYIAIEKEINSGKLGDVMFVEVNF 554
              A++K L L      R+   ++  +K I SG+LG V+  E +F
Sbjct: 112 YELAESKSLLLAIYQNRRWDGDFLTAKKIIESGRLGQVVEFESHF 156


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 171 NKGDQVIAAVAARTKPEEFAKLHNIPIV-FDSYKALAESNEID 296
           +K + +I+AV    KP+  +K+ NIP    D+  A++E  E +
Sbjct: 148 SKAESIISAVLGEEKPDPSSKVSNIPEENRDATSAISEGKETE 190


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -2

Query: 173 VRIAVESVNKIMADFSCGYDTPTYGHLKWIQSISNTKQYFFILN*TLSKYVTLIL 9
           VRIA+ +  +++ D +  Y  P  G +KWI S    ++++  L+ +L   +T I+
Sbjct: 46  VRIALVADPQLVDDLTYDYPRPLIGIVKWI-SDQFLRRHWRYLHKSLKPDITFIM 99


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 484 PTLPLKKKSIPGNWE 528
           P L ++KKS+ GNWE
Sbjct: 596 PFLHIRKKSVDGNWE 610


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 568 TIGTPKLTSTNITSPNFPELISFSMAM*VGENLDQTASIRNS 443
           TIG+    S+N++SP+  E     +   V ENL +   + NS
Sbjct: 375 TIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQKRGLVTNS 416


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 120 TAGKISHDFVNAFNSYPNKGDQVIAAVAARTKPEEF 227
           TA K   DF +A NSY  +G+ +    A  +   +F
Sbjct: 58  TAPKYDVDFTSALNSYKYEGETIPTKAAGESNKFDF 93


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 19  VTYLLNVQFNIKKYCFVF 72
           VTY L +QFN K   F+F
Sbjct: 54  VTYSLTIQFNFKSLLFLF 71


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 568 TIGTPKLTSTNITSPNFPELISFSMAM*VGENLDQTASIRNSFL 437
           TIGTPK++   + S  F + +S S+ +   +       +R+ FL
Sbjct: 594 TIGTPKISRPELLSSVFHDFLSKSLTVNPKQRPSSGELLRHPFL 637


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 351 LENGKHVLCEKPLCLNYKQAESLIRFAKNKKLFLMEAVWSRFSPTYIA 494
           LENG  +   KPL +++ +  S+   AK   +   EAV+   +   +A
Sbjct: 146 LENGTVITATKPLLISHHRISSITSTAKWVLVIEKEAVFQTLTEEALA 193


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 227 KFFWLRSSGYCGYNLIPLVRI 165
           KF WL+ + +C Y  IPL  I
Sbjct: 301 KFPWLKKNSFCLYLPIPLTSI 321


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 249 IVFDSYKALAESNEIDVAYIG--ALNPDHYNISKLF 350
           +VF  YK   E+ ++ VA+IG   L P H    K F
Sbjct: 1   MVFADYKQRVENGDLAVAWIGRNKLIPLHIEAEKTF 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,655
Number of Sequences: 5004
Number of extensions: 51121
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)