Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n24f
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    50   2e-06
04_03_0312 - 14219094-14219279,14219551-14219611,14219699-142198...    32   0.39 

>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +3

Query: 252 VFDSYKALAESNEIDVAYIGALNPDHYNISKLFLENGK--HVLCEKPLCLNYKQAESLIR 425
           +F  +  L +S   D   + + N  HY I    + + K  H+L EKPLC   +  + ++ 
Sbjct: 118 IFSGHGELLDSGLCDAVVVSSPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVVE 177

Query: 426 FAKNKKLFLME-AVWSRFSPTYIAIEKEINSGKLGDVMFVEV 548
            AK +   L++  +  R+ P    +   + SG LG V  V +
Sbjct: 178 AAKQRSDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAI 219


>04_03_0312 -
           14219094-14219279,14219551-14219611,14219699-14219809,
           14220225-14220403
          Length = 178

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 20/88 (22%), Positives = 42/88 (47%)
 Frame = +3

Query: 159 NSYPNKGDQVIAAVAARTKPEEFAKLHNIPIVFDSYKALAESNEIDVAYIGALNPDHYNI 338
           N Y     + +  + AR+  + F +   + + F    A+   +++DV Y+G    DHY  
Sbjct: 6   NFYMKASKKGLGNITARSPADCFGEEGYVWLDFSDLHAIYRRDKMDVNYVGVWCIDHYIC 65

Query: 339 SKLFLENGKHVLCEKPLCLNYKQAESLI 422
             +  ++G  V+ + PL  ++KQ +  +
Sbjct: 66  LLIHPKDGTVVVLD-PLDYSHKQYKEFL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,834
Number of Sequences: 37544
Number of extensions: 278388
Number of successful extensions: 718
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)