Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n21r
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    71   6e-13
AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    66   2e-11
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    62   5e-10
AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical ...    39   0.003
U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical pr...    36   0.037
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    29   2.4  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      29   2.4  
U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...    29   2.4  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeo...    28   5.6  
U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.       28   5.6  
Z83237-2|CAB05789.1|  258|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF039050-5|AAC47938.1|  499|Caenorhabditis elegans Cytochrome p4...    28   7.4  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    27   9.8  

>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
 Frame = -3

Query: 610 VTEVCLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPTIN-GLSPDAPDA 446
           V+  CL CIC   SGCK  + C  +    +CG ++I  GY+ D G+PT   G + +A  A
Sbjct: 16  VSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA--A 72

Query: 445 YSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 266
           +  C  D  CA   V+NY  R+   CNG G+  C      H  G  GC       Y N  
Sbjct: 73  WKRCADDLNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNGV 132

Query: 265 NQC 257
             C
Sbjct: 133 KSC 135


>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = -3

Query: 598 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPTI-NGLSPDAPDAYSSCT 431
           CL CIC   SGCK     +     +CG ++I   Y+ D G+PT  +G + +A  A+  C 
Sbjct: 20  CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCA 77

Query: 430 VDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 257
            D  CA   V+NY  R+   C G G   C      H  G  GC       Y N    C
Sbjct: 78  NDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNGIKSC 135


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
 Frame = -3

Query: 598 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP-TINGLSPDAPDAYSSC 434
           CL CIC   SGCK  + C  +    +CG ++I   Y+ D G+P   +G S +   A+  C
Sbjct: 20  CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRC 76

Query: 433 TVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 257
             D  CA   V+NY  R+  +C G G   C      H  G  GC       Y    + C
Sbjct: 77  ADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHASGTLGYWKGVHSC 135


>AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical
           protein C45G7.1 protein.
          Length = 145

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -3

Query: 550 QCEGETC-GLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMKRFGQ 374
           QC    C G F I   Y+ D G+P           A+  C  D  CA   + NY  R+  
Sbjct: 20  QCMHCMCLGNFVIKLPYYIDCGEPG-KQRGESTESAWKRCADDLDCAETCMMNYYHRYKS 78

Query: 373 DCNGDGVVNC 344
            CNG G+  C
Sbjct: 79  QCNGLGMSEC 88



 Score = 31.9 bits (69), Expect = 0.46
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -3

Query: 418 CAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 257
           C A + QNY  R+   C+G G+  C  +   H  G  GC       Y     +C
Sbjct: 88  CEA-SFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140


>U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical
           protein C55F2.2 protein.
          Length = 159

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
 Frame = -3

Query: 598 CLGCICQAISGCKQGLQCEGET-----CGLFRITWGYWADAGKPTINGLSPDAPDAYSSC 434
           CL  +C   SGC   L C  +      CG FR+    +    +P       +  +A+ +C
Sbjct: 31  CLLAMCDQDSGCVP-LGCSVDQFDRIGCGYFRLNIYQFQQCYQPGKKDEDTEN-EAWMNC 88

Query: 433 TVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGC 302
             D  C+A  ++    +F   C G     C     IH  G  GC
Sbjct: 89  AQDYQCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGC 130


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 27/86 (31%), Positives = 34/86 (39%)
 Frame = -1

Query: 492 PENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRRE 313
           P N  S        +PT     + T P  PSKTT      T   T   TA TT  ST   
Sbjct: 322 PANTKSSAHLDNSDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTV 379

Query: 312 ATGAPANFLLTM*TCLTSASMSSRST 235
            T  P     T     T+AS ++++T
Sbjct: 380 TTQKPTTVTSTTTLPSTTASTTTKTT 405


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/83 (30%), Positives = 35/83 (42%)
 Frame = -1

Query: 483 PPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATG 304
           P +  + +   +PT     + T P  PSKTT      T   T   TA TT  ST    T 
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQ 422

Query: 303 APANFLLTM*TCLTSASMSSRST 235
            P     T     T+AS ++++T
Sbjct: 423 KPTTVTSTTTLPSTTASTTTKTT 445


>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 263 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 436
           VK   + K  F+        V  H+ + + +  ++ +    F+VVLD  G R A R  + 
Sbjct: 96  VKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAP 155

Query: 437 ARVG 448
            RVG
Sbjct: 156 GRVG 159


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/72 (33%), Positives = 31/72 (43%)
 Frame = -1

Query: 450 MPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 271
           +PT     + T P  PSKTT      T   T   TA TT  ST    T  P     T   
Sbjct: 495 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 552

Query: 270 CLTSASMSSRST 235
             T+AS ++++T
Sbjct: 553 PSTTASTTTKTT 564


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = -3

Query: 445 YSSCTVDPYCAAQTVQNYMKRFGQDC-----NGDGVVNCYDYMAIH 323
           Y +C VD Y A     + +  +G  C     N DG+   Y ++ IH
Sbjct: 86  YGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIH 131


>U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeobox
           protein 20 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 131 KIILVLMETMTDYHKAVVGYSNLVGFLIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAP 307
           +I ++  E +  Y +A   ++  V  L++ QS +R +  ++I+ +V   YI++RKF G  
Sbjct: 111 QIRVLYNEELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQ 167

Query: 308 V 310
           V
Sbjct: 168 V 168


>U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 131 KIILVLMETMTDYHKAVVGYSNLVGFLIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAP 307
           +I ++  E +  Y +A   ++  V  L++ QS +R +  ++I+ +V   YI++RKF G  
Sbjct: 111 QIRVLYNEELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQ 167

Query: 308 V 310
           V
Sbjct: 168 V 168


>Z83237-2|CAB05789.1|  258|Caenorhabditis elegans Hypothetical
           protein R06B9.2 protein.
          Length = 258

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 426 TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANF 289
           T+T  +  S+T    +  TATA    TA+  WR T + A   P  +
Sbjct: 57  TKTNSKGESETKTHTVHYTATAKHLDTAVPLWRKTDKAARLLPGKY 102


>AF039050-5|AAC47938.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 34A8 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 564 HPEIAWQMQPRHTSVTGGS---SETSAKQTPATNSN 662
           HPE+  +++   T VTGG+   S T   +TP  N+N
Sbjct: 327 HPEVVEKLRKELTEVTGGTRGVSLTDRTKTPYLNAN 362


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 220 LSNQKPDQITVTYHCFMVIRHSFHQHQYYFYDESVT 113
           L+  K D+I   Y CF   +  FH +  +  D +VT
Sbjct: 506 LAESKKDEIRKLYDCFKNAKRRFHPNNAFGEDGNVT 541


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 272 VYIVKRKFAG---APVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLDGLRGAVRVYSAAR 442
           VY + R F     A V S +V++  + A+ HS+ V     +   +  GLRG    Y+ A 
Sbjct: 208 VYALARVFIPNYTAQVISDIVNKRGIQALIHSIIVLTCLTATSSLFGGLRGGCFDYATAL 267

Query: 443 VGIR 454
           V +R
Sbjct: 268 VTLR 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,614
Number of Sequences: 27780
Number of extensions: 406900
Number of successful extensions: 1014
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)