Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n20r
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    30   1.8  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   7.1  

>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 255 SRVFHIIVHNSVIDDGWVPVEKYPVNPMGKIPNFH*FISYSGRSMDRIHA 106
           +R  HIIV ++  DDG  PVE   + P  + P+ H F  ++ R+   +H+
Sbjct: 136 NRAGHIIVISNTSDDGVAPVESL-LQPW-RFPSVHAFSFHNSRNTRTMHS 183


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 592 CNKTVNFSTFNKDFNVSSI 536
           C KT  FSTF+K+ N+S I
Sbjct: 115 CVKTAGFSTFSKETNISGI 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,474,192
Number of Sequences: 37544
Number of extensions: 297398
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)