Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n20f
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.6  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   6.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.3  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   8.3  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 526 YQVEYKWSSASSMVPIRARASSAHIEHTITSAN--DNNNCNEPISF-EPVSSPQQQQNE 359
           + ++++ + ASS     A++SS H        N    +N NEPISF EP SS     NE
Sbjct: 51  HSLKHETNGASSSNNNVAKSSS-HDSFKAKPKNYDSTSNSNEPISFNEPDSSNSHHNNE 108


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 505 SSASSMVPIRARASSAHIEHTITSANDNNN 416
           SS+SS VPI +  SS+H   + +S++ +++
Sbjct: 202 SSSSSSVPITSSTSSSHSSSSSSSSSSSSS 231


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 447 TRSPVPMITTIVMNQLVLNQSRVPSSNKTKSREV 346
           T SPVP  ++   +  +L+ S +PSS+   +  +
Sbjct: 117 TTSPVPTTSSTPTSSSILSNSTIPSSSSISASTI 150


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 517 EYKWSSASSMVPIRARASSAHIEHTITSANDNNNC-NEPISFEPVSSPQQQQNE 359
           E K S+   +  +   ++ +HIE         ++  NEP+  EP S P+ Q+N+
Sbjct: 62  ETKHSTKDDVNLVIPGSTWSHIEGVYEMLKSRHDRQNEPVIEEPSSHPKNQKNQ 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,963
Number of Sequences: 5004
Number of extensions: 45980
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)