Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n20f
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0314 + 7398247-7400877                                           27   8.5  
03_01_0383 + 2980693-2980816,2980908-2981226,2981315-2981624           27   8.5  

>03_02_0314 + 7398247-7400877
          Length = 876

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 553 AATPATVTLYQVEYKWSSASSMVPIRARASSAHIEHTITSANDNNNC 413
           AAT  +V  ++VE + S + ++VP   +A  A + H   S +  + C
Sbjct: 187 AATLYSVNWFKVESRGSGSPALVPAAKQAFDAAVVHACWSKHLQSEC 233


>03_01_0383 + 2980693-2980816,2980908-2981226,2981315-2981624
          Length = 250

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -3

Query: 535 VTLYQVEYKWSSASSMVPIRARASSAHIEHTITSANDNNNCNEPISFEPVSSPQQQQNEV 356
           +T  Q   KW  A + V I A  +    +++  S ND   CN P     ++ P  +Q  V
Sbjct: 79  ITCDQSNSKWCKAGTSVTITA-TNLCPPDYSKPS-NDGGWCNPPRQHFDMAQPAWEQIGV 136

Query: 355 T*GGLILFKFLKTL-----SIKRPIDAN-YFAMIL 269
             GG++   F +        ++  I+ N YF ++L
Sbjct: 137 YRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVL 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,683
Number of Sequences: 37544
Number of extensions: 278875
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)