Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n20f
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic mul... 33 0.12
AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell... 33 0.12
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 30 1.1
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 29 1.9
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 29 1.9
AF040661-4|AAG24211.2| 185|Caenorhabditis elegans Hypothetical ... 29 2.5
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 28 4.4
U00043-2|AAC77512.1| 242|Caenorhabditis elegans Set (trithorax/... 28 4.4
Z69661-1|CAA93493.1| 253|Caenorhabditis elegans Hypothetical pr... 28 5.8
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 28 5.8
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 5.8
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 27 7.6
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 27 7.6
>AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic
multivulva protein LIN-35 Rb protein.
Length = 961
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 520 VEY-KWSSASSMVPIRARASSAHIEHTITSANDNNNCNEPISFEPVSSPQQQQNEV 356
+EY W S S + P+ R AH + D N PI F P+ P ++E+
Sbjct: 676 IEYFSWKSDSPLWPMVVRCPFAHFQEFGEDWADKLNSYSPIKFTPIKKPDDLRDEL 731
>AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell
lineage protein 35 protein.
Length = 961
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 520 VEY-KWSSASSMVPIRARASSAHIEHTITSANDNNNCNEPISFEPVSSPQQQQNEV 356
+EY W S S + P+ R AH + D N PI F P+ P ++E+
Sbjct: 676 IEYFSWKSDSPLWPMVVRCPFAHFQEFGEDWADKLNSYSPIKFTPIKKPDDLRDEL 731
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 404 WFITIVVIIGTGDRVFDMCRGRPCSDGYHXXXXXPLVLDLV*GHGCRSR 550
W++ ++I+ R FD+C GR S G P + + + C++R
Sbjct: 4 WYVLSILIVSATARFFDVCPGRRQSIGACLVGLCPAGSECINSYCCKNR 52
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 489 WYPSEHGRPRHISNTRS 439
+YP HG+P+H NTR+
Sbjct: 955 YYPERHGQPQHTDNTRA 971
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 489 WYPSEHGRPRHISNTRS 439
+YP HG+P+H NTR+
Sbjct: 955 YYPERHGQPQHTDNTRA 971
>AF040661-4|AAG24211.2| 185|Caenorhabditis elegans Hypothetical
protein W10G11.2 protein.
Length = 185
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 447 TRSPVPMITTIVMNQLVLNQSRVPSSNKTKSREVDSFCSSF 325
T+ P P V+ Q+ +N SNKT ++ V C F
Sbjct: 25 TKGPEPTKCLEVLKQIAINSKEFDISNKTSAKTVIENCEKF 65
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 580 TASTRCIKEAATPATVTLYQVEYKWSSASSMVPIRA-RASSAHIEHTITS 434
T ST +TP+T T SS SS PIRA R S+ T T+
Sbjct: 534 TTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAPIRAVRTSTPTTRRTTTT 583
>U00043-2|AAC77512.1| 242|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 1, isoform
a protein.
Length = 242
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -1
Query: 486 YPSEHGRPRHISNTRSPVPMITTIVMNQLVLNQSRVPSSNKTKSREVDSFCSSF*RRLVL 307
+ S GR NTRS + V N + +V SN+ S+++ R VL
Sbjct: 39 HSSSSGRMTPSKNTRSRKGVSVKDVSNHKITEFFQVRRSNRKTSKQISDEAKHALRDTVL 98
Query: 306 KGQSTQIISL 277
KG + +++ +
Sbjct: 99 KGTNERLLEV 108
>Z69661-1|CAA93493.1| 253|Caenorhabditis elegans Hypothetical
protein F48F7.3 protein.
Length = 253
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 137 YHRNTTYVCVFSKNKYNHSNISPFLLLVILNDYHYAM 27
YH N TY +F N+ N P LLL I +D H M
Sbjct: 49 YH-NITYKAIFWINEINKCRHGPKLLLKIDDDVHIDM 84
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 508 WSSASSMVPIRARASSAHIEHTITSANDNNNCNEPISFEPVSSPQQQQNEV 356
+++ + VP ASS I TS +D +E + E ++SP+ + N +
Sbjct: 730 FATTNQAVPQNQPASSVQIAQVSTSESDAPGTSEAAATETMTSPKTKNNVI 780
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 508 WSSASSMVPIRARASSAHIEHTITSANDNNNCNEPISFEPVSSPQQQQNEV 356
+++ + VP ASS I TS +D +E + E ++SP+ + N +
Sbjct: 730 FATTNQAVPQNQPASSVQIAQVSTSESDAPGTSEAAATETMTSPKTKNNVI 780
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
protein R10E8.6 protein.
Length = 1696
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 412 NEPISFEPVSSPQQQQNEVT*GGLILFKFLKTLSIKRPIDANY 284
+EPISFE +S ++ N T G + F+ T + R I Y
Sbjct: 574 SEPISFEDLSFLKEVCNNCTTGKYVKFQHFLTSNTPRQIKLQY 616
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 341 ESTSRDFVLLLLGTR-DWFKTNWFITIVVI 427
E+T+ F +LL + D+F TNW+I ++ +
Sbjct: 1051 EATAESFRILLQNMKQDFFDTNWYIILMTL 1080
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 341 ESTSRDFVLLLLGTR-DWFKTNWFITIVVI 427
E+T+ F +LL + D+F TNW+I ++ +
Sbjct: 1051 EATAESFRILLQNMKQDFFDTNWYIILMTL 1080
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 341 ESTSRDFVLLLLGTR-DWFKTNWFITIVVI 427
E+T+ F +LL + D+F TNW+I ++ +
Sbjct: 1051 EATAESFRILLQNMKQDFFDTNWYIILMTL 1080
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,886
Number of Sequences: 27780
Number of extensions: 261706
Number of successful extensions: 683
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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