Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n20f
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 351 HVTSFCCCW 377
           HV   CCCW
Sbjct: 6   HVVMSCCCW 14


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 517 EYKWSSASSMVPIRARASSAHIEHTITSANDNNNCNEPISFEPVSSP 377
           ++KW    +   +RAR     I   + +A D  N +E   + P S P
Sbjct: 622 KHKWFDGFNWEGLRARTLEPPIMPRVQNATDTTNFDE---YPPDSDP 665


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 484 VPSKTLKTTCTRPGIRSRLPESLPP*YTW 570
           +PS TL     R GIR   P +  P  TW
Sbjct: 493 IPSSTLYKIARREGIRLAAPFNASP-TTW 520


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 134 HRNTTYVCVFSKNKYNHSN 78
           H N  Y   ++ N YN++N
Sbjct: 324 HNNNNYKYNYNNNNYNNNN 342


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 128 NTTYVCVFSKNKYNHSNISPFLLLVILN 45
           N  Y   ++ N YN++N +  L   I+N
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 128 NTTYVCVFSKNKYNHSNISPFLLLVILN 45
           N  Y   ++ N YN++N +  L   I+N
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 151 DVYVCITEILRMCA 110
           DV++C   IL +CA
Sbjct: 145 DVWMCTASILNLCA 158


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 143 RMYHRNTTYVCVFSKNKYNHS 81
           R  H N  Y   ++ N YN++
Sbjct: 88  RTIHNNNNYKYNYNNNNYNNN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,771
Number of Sequences: 438
Number of extensions: 3901
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)