Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n19r
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    32   0.072
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.7  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 672 AFAFGFVVLGNAMAFGPTSGAHMNPAVTLAAAL 574
           +FA+GF  +      G  SG H+NPAVT++ A+
Sbjct: 348 SFAWGFGCMLGVYIAGGISGGHVNPAVTISLAI 380


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 578 AAASVTAGFMCAPDVGPNAIALPSTTNPK-AKAGCDSTTASFPLYGTT 718
           A++S+T+  + +  +  +++A  STT+   A +  +STT++ P    T
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSAT 177


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 255 SLNPARSFAPALYHGIWQYHWVY 187
           SL     FA  LY G++  HW+Y
Sbjct: 146 SLTAHYLFAMCLYRGLYIPHWIY 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,521
Number of Sequences: 5004
Number of extensions: 24190
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)