Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n19f
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 38 0.001
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.096
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 29 0.51
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.2
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.7
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 3.6
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 8.3
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 8.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.3
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 25 8.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 8.3
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 37.5 bits (83), Expect = 0.001
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 103 VRRWWRALVSELLATAFLVWLGVSSVVPYKGKEAVVLSHPA--FAFGFVVLGNAMAFGPT 276
+R ++R +E L T LV GV S + S + FA+GF + G
Sbjct: 306 IRHFFREGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGI 365
Query: 277 SGAHMNPAVTLAAAL 321
SG H+NPAVT++ A+
Sbjct: 366 SGGHVNPAVTISLAI 380
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.5 bits (68), Expect = 0.096
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = -3
Query: 317 AAASVTAGFMCAPDVGPNAIALPSTTNPK-AKAGCDSTTASFPLYGTTELTPSHTRNAVA 141
A++S+T+ + + + +++A STT+ A + +STT++ P T+ T S + A
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATP---TSSATSSSLSSTAA 186
Query: 140 SSSETNA 120
S+S T++
Sbjct: 187 SNSATSS 193
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 266 NAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETNAR 117
N + +T A G T+S YG+T + H RN++A S+ + +
Sbjct: 513 NVVTTQTTHEEDALIGSSINTSSHQHYGSTLNSTPHRRNSIALSNRAHVK 562
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -3
Query: 263 AIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETNARHHRRTQPEKPR 84
+++ S P+ A D+T++S P TTE S T + SS + +A T P
Sbjct: 413 SLSKESPVEPEKPALPDATSSSTP---TTENKESWTNQGIKSSQQRSANASPATSPSNQA 469
Query: 83 GVSSS 69
+ +S
Sbjct: 470 SIHAS 474
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Frame = -3
Query: 326 PCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDS-TTASFPLYGTTELTPSHTRN 150
P + +A+V G A + T K AG S TT P TT+ TP
Sbjct: 524 PGTTSAAVPGGKKSAIEAAAPIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATT 583
Query: 149 AVASSSETNARHHRRTQPEKPRGVSSSVE 63
S T T+P G +++ E
Sbjct: 584 KPTPVSATEEHAAGTTKPAPAAGATATAE 612
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/73 (17%), Positives = 41/73 (56%)
Frame = -3
Query: 338 GDMRPCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSH 159
G ++ +++SV++ + P++ + +TT+P + + S+++S ++ + S
Sbjct: 121 GVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180
Query: 158 TRNAVASSSETNA 120
+ ++ +SSS +++
Sbjct: 181 SSSSSSSSSSSSS 193
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -3
Query: 251 PSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSS 132
PS+++ A + STT+S L +T LT S + +AV+S++
Sbjct: 110 PSSSSSSAASSTTSTTSSSSLVSSTTLT-SSSPSAVSSTT 148
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 55 HMPSTDEDTPRGFSGWV 105
+ P +DTP+G S W+
Sbjct: 565 YAPQASDDTPKGLSKWI 581
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 116 HHRRTQPEKPRGVSSSVEGMW 54
H R + E P G SS+EG W
Sbjct: 74 HQRIGKKETPSGGRSSIEGSW 94
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 271 PTSGAHMNPAVTLAAALQGRMS----PALAAAYTVAQVXXXXXXXXXXXXVTPASALGTD 438
P G + +P T ++A+ G +S P A+ T+A+V TP++A+G+
Sbjct: 235 PNRG-YFSPMHTYSSAVPGPISVPSAPYGRASSTIAEVSPMYGSHAAPYASTPSAAVGSS 293
Query: 439 EGCT 450
G T
Sbjct: 294 RGST 297
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -3
Query: 236 PKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSET 126
P + + + +S+P+ + +L+ TR+ +ASS T
Sbjct: 213 PSSASAYQAGYSSYPVRSSPQLSHEDTRHGIASSGST 249
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 8.3
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -1
Query: 304 SRPGSCAHPTSARTPSHCRAPQTRKQKRDVTARRPPSLCTAPRS*RRATRGTPWPAARRP 125
S+P A+P S + R P Q R T + + + + ++AT T + P
Sbjct: 1007 SKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQAT--TVSASKPAP 1064
Query: 124 TLATIAAPSRKN 89
+ T AA S N
Sbjct: 1065 STVTSAASSPSN 1076
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,012
Number of Sequences: 5004
Number of extensions: 29435
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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