Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n16f
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    95   6e-21
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.33 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.44 
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.1  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   5.4  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 53/114 (46%), Positives = 72/114 (63%)
 Frame = +2

Query: 8   DSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNK 187
           +   E+  ++V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N   
Sbjct: 59  EEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIG 116

Query: 188 VMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 349
            +K IL  FK+  F+ GESMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 117 FVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 29  VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 175
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 390 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 277
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 307 WYLRTIKVSIFHHGNHAITIHRLPSKELKFL 215
           WY++T K+SI    N+  + +R P  +  FL
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 305 VFAYHQSLYIPSWQPC-HHN 249
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 229 ELKFLKPAEDVFHYFVHVCFKYFNLVR 149
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 222 SSLNLPRMSFITLFMFVLNTS 160
           +SLN PR+  +T++ F+  T+
Sbjct: 77  NSLNFPRIEGLTIYKFIFKTA 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,579
Number of Sequences: 5004
Number of extensions: 44561
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)