Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n16f
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 82 2e-16
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 33 0.11
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 1.3
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 3.1
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 4.1
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 7.2
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 27 7.2
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 27 9.5
08_01_0686 + 6049563-6050900 27 9.5
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 82.2 bits (194), Expect = 2e-16
Identities = 48/115 (41%), Positives = 64/115 (55%)
Frame = +2
Query: 2 GTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNM 181
G D VDIV RL E F DKK + ++K Y+K L AKL+ ++ E FK N+
Sbjct: 59 GVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNI 114
Query: 182 NKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 346
K +LG+ K+LQFF GESM DG + Y+ DG P ++F HGL+E K
Sbjct: 115 EGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 277 FHHGNHAITIHRLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 143
FHH H ++ PSK+L ++L+ FH F ++C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 74 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 247
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 248 D 250
+
Sbjct: 1195 E 1195
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 47 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 226
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 227 FFTGE 241
+ E
Sbjct: 237 VLSKE 241
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 149 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 51
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 98 YLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGR 211
YL+D ++ KL EK D E+ + + + M ++LG+
Sbjct: 253 YLEDSKNEVYMKLAEKRVDCQELSEADFEQAMLEVLGK 290
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 330 PCL-KNIMIGICVPSKSLYSIMATMPSQSIDSPV 232
PCL K+ GI P+K ++ TMPS S + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 302 FAYHQSLYIPSWQPCHHN 249
F YH +Y+ SW C H+
Sbjct: 264 FLYHGRMYVSSWHICFHS 281
>08_01_0686 + 6049563-6050900
Length = 445
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 313 HDWYLRTIKVSIFHHGNHAITIHRLPS 233
++ + + + +SI HHGNH + +HR S
Sbjct: 209 YNTFFQVLLLSI-HHGNHQVYLHRFSS 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,720,871
Number of Sequences: 37544
Number of extensions: 259252
Number of successful extensions: 715
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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