Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n16f
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    91   4e-19
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   2.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   2.8  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      29   2.8  
Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U40958-3|ABQ13075.1|  219|Caenorhabditis elegans Hypothetical pr...    28   3.7  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    27   8.6  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    27   8.6  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
 Frame = +2

Query: 2   GTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKT 175
           G+D  VE G+DIVLNH+LVE   + D   +  Y+K +MK ++  +E+   D+  V+ FK 
Sbjct: 59  GSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKK 118

Query: 176 NMNKVMKDILG--RFKELQFFTGESM---DCDGMVAMMEYRDFDGTQIPIMMFFKHGLEE 340
            +   +  +L   RFK L FF GE       +G VA++EYRD DGT++P +M  K  + E
Sbjct: 119 KIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIE 178

Query: 341 EK 346
           EK
Sbjct: 179 EK 180


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 187 FVHVCFKYFNLVRRLLFQFCY*FFHI 110
           F+++C +Y    RR L  FCY  F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 80  KKSYTLYLKDYMKKLVAKLEEK 145
           +K+Y  YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 80  KKSYTLYLKDYMKKLVAKLEEK 145
           +K+Y  YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 62    TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 226
             T+ FG  D++ Y++ +KD  KKL  +  E+      +  TN  K    + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 62    TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 226
             T+ FG  D++ Y++ +KD  KKL  +  E+      +  TN  K    + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 80  KKSYTLYLKDYMKKLVAKLEEK 145
           +K+Y  YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775


>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 77  DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 220
           +KK+  L L    +K + K+EEKA       K+ ++K +KD L R K+
Sbjct: 22  EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64


>U40958-3|ABQ13075.1|  219|Caenorhabditis elegans Hypothetical
           protein F09F9.5 protein.
          Length = 219

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 139 FQFCY*FFHIVFEVQCVGFLVTEGVCF 59
           +Q C+ F H+      +GF    GVCF
Sbjct: 53  YQTCFGFMHVKIATCSIGFFALLGVCF 79


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 519 LFYCCMQYIFLNTKLFSLVMREASSCQDADMIDK*IKK 406
           LFYC + Y+F+   +  +  RE S  +D   I + IK+
Sbjct: 505 LFYCSLLYLFIFVTVQMIPAREISIMKDLHHIGREIKR 542


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 342 RNSKC*IRNNSIIPNWRLDT 401
           RNS+   R+N+++P W LD+
Sbjct: 156 RNSRSFTRSNNVLPTWSLDS 175


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 342 RNSKC*IRNNSIIPNWRLDT 401
           RNS+   R+N+++P W LD+
Sbjct: 154 RNSRSFTRSNNVLPTWSLDS 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,159,206
Number of Sequences: 27780
Number of extensions: 244488
Number of successful extensions: 676
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)