Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n15r
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114... 53 2e-07
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 50 1e-06
03_04_0032 - 16663018-16663026,16663072-16663235,16663384-166635... 48 6e-06
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 31 0.95
05_01_0126 + 858259-858489,858641-859189,859545-860162 31 1.3
08_02_0254 - 14879724-14880635 29 2.9
12_01_0297 - 2244793-2244945,2245337-2245396,2245529-2245628,224... 29 3.8
11_01_0296 - 2222329-2222481,2222777-2222836,2222965-2223064,222... 28 6.7
02_02_0106 + 6814391-6817007,6817086-6817462 28 8.8
>03_05_0110 +
20910084-20910187,20910255-20910303,20911334-20911442,
20911597-20911690,20912253-20912386,20912519-20912682,
20912818-20912889
Length = 241
Score = 53.2 bits (122), Expect = 2e-07
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Frame = -1
Query: 730 LKMPEVWDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAH---K 560
+++P D W + F ++N L L C PE+C MTA ++ + A K
Sbjct: 72 VRLPPGEDINEWLAVNTVDFFNQVNLLYGTLAEFCTPESCPTMTAGPKYEYRWADGVQIK 131
Query: 559 TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSSIAK--LGSVCRRVYRIFSHAYF 386
P E A Y + +D L+ FP ++ K + ++ +R++R+++H Y
Sbjct: 132 KPIEVSAPKYVEYLMDWIEGQLDDESIFPQKLGTPFPPNFKEVVKTIFKRLFRVYAHIYH 191
Query: 385 HHRSIYDAFERETHL--C-KRFTYFVTKYPIIPQEIL 284
H + + E HL C K F F T++ +I ++ L
Sbjct: 192 SHFQKIVSLKEEAHLNTCFKHFILFTTEFGLIDKKEL 228
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 50.4 bits (115), Expect = 1e-06
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Frame = -1
Query: 730 LKMPEVWDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAH---K 560
+++P D W + F ++N L L C P TC M+A ++ + A K
Sbjct: 863 VRLPPGEDLNEWLAVNTVDFFNQVNILYGTLMEFCTPTTCPTMSAGPKFEYRWADGIQIK 922
Query: 559 TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVN--IKDSSIAKLGSVCRRVYRIFSHAYF 386
P E A Y + +D L+ FP ++ + + ++ +R++R+++H Y
Sbjct: 923 KPIEVSAPKYVEYLMDWIEVQLDDESIFPQKLGTPFPQNFREVVKTIFKRLFRVYAHIYH 982
Query: 385 HHRSIYDAFERETHL--C-KRFTYFVTKYPIIPQEILILPKLD 266
H + + E HL C K FT F ++ +I + L P +D
Sbjct: 983 THFQKIVSLKEEAHLNTCFKHFTLFTWEFKLIDKAEL-APLID 1024
>03_04_0032 -
16663018-16663026,16663072-16663235,16663384-16663517,
16664300-16664393,16667458-16667566,16668441-16668489,
16668622-16668647
Length = 194
Score = 48.4 bits (110), Expect = 6e-06
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Frame = -1
Query: 730 LKMPEVWDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAH---K 560
+++P D W + F ++N L L C TC M+A ++ + A K
Sbjct: 46 VRLPIGEDLNEWLAVNTVDFFNQVNFLYGTLMEFCTSSTCPIMSAGPKYEYRWADGMKVK 105
Query: 559 TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVN--IKDSSIAKLGSVCRRVYRIFSHAYF 386
P + A Y + +D L+ FP ++ + + ++ +R++R++SH Y
Sbjct: 106 KPVQVSAPKYVEYLMDWVESQLDDEAIFPQKIGAPFPQNFREVIRTIFKRLFRVYSHMYH 165
Query: 385 HHRSIYDAFERETHLCKRFTYFV 317
H + + E HL F +FV
Sbjct: 166 SHFQMILKLKEEAHLSTCFKHFV 188
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = -1
Query: 397 HAYFHHRSIYDAFERETH----LCKRFTYFV 317
HAY HHR IY+AF H +C R +F+
Sbjct: 682 HAYGHHRLIYEAFNSYHHCEIIICMRIHFFM 712
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 453 IHQLPSWDLFVEGFTGSSHMHTFIIVQFMMH 361
+ QLP W +F TGS H F VQ ++H
Sbjct: 371 VPQLPRWQIFYARRTGSEVYHAFFRVQDVIH 401
>08_02_0254 - 14879724-14880635
Length = 303
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/55 (25%), Positives = 20/55 (36%)
Frame = -1
Query: 697 WKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAHKTPKECPAID 533
W Y++L QFC + +N C E ++ W C P ID
Sbjct: 224 WLYDNLNQFCGAATE-GIDSRNTCISEVARKLVTIGFWCIQCTPEDRPSMSEVID 277
>12_01_0297 -
2244793-2244945,2245337-2245396,2245529-2245628,
2245712-2245779,2245922-2246017,2246156-2246244,
2246320-2246464,2246643-2246732,2246816-2246887,
2247052-2247132,2247361-2247492,2247613-2247690,
2247930-2248085,2248227-2248324,2248418-2248499
Length = 499
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = -1
Query: 556 PKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSSIAKLGSVCRRVYRIFSHAYFHHR 377
P A D LDG+ +L + ++ SI +G +C ++F+ + R
Sbjct: 297 PTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISI--VGKICAEAEKVFNQDLYFKR 354
Query: 376 SIYDAFERETHL 341
++ E THL
Sbjct: 355 TVKHVGEPMTHL 366
>11_01_0296 -
2222329-2222481,2222777-2222836,2222965-2223064,
2223152-2223219,2223369-2223464,2223603-2223691,
2223762-2223906,2224100-2224189,2224271-2224342,
2224543-2224623,2224766-2224897,2225026-2225103,
2225280-2225435,2225521-2225618,2225712-2225793
Length = 499
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = -1
Query: 556 PKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSSIAKLGSVCRRVYRIFSHAYFHHR 377
P A D LDG+ +L + ++ SI +G +C ++F+ + R
Sbjct: 297 PTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISI--VGKICAEAEKVFNQDLYFKR 354
Query: 376 SIYDAFERETHL 341
++ E THL
Sbjct: 355 TVKYVGEPMTHL 366
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 376 SIYDAFERETHLCKRFTYFVTKYPIIPQEILILPKLDD 263
+I D F + T+L F YF IP + +LPKL D
Sbjct: 305 TIPDGFGKMTNLTLLFLYFNKLSGSIPPSVGLLPKLTD 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,189,449
Number of Sequences: 37544
Number of extensions: 394584
Number of successful extensions: 829
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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