Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n15r
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...   266   1e-71
AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical ...    58   6e-09
Z77660-8|CAB01178.2|  193|Caenorhabditis elegans Hypothetical pr...    45   5e-05
Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z71264-4|CAA95831.1|  348|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    28   6.0  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    28   6.0  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score =  266 bits (652), Expect = 1e-71
 Identities = 118/150 (78%), Positives = 132/150 (88%)
 Frame = -1

Query: 709 DEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAHKTPKECPAIDY 530
           DEGVWKYEHLRQFC+ELNGLA+ LQ EC PETC QMTATEQWIFLCAAHK P ECPAIDY
Sbjct: 65  DEGVWKYEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCAAHKNPNECPAIDY 124

Query: 529 TRHTLDGAACLLNSNKYFPSRVNIKDSSIAKLGSVCRRVYRIFSHAYFHHRSIYDAFERE 350
           TRHTLDGAA LLNSNKYFPSRVNIK+ SI+KLGSV RRVYRIFSHA+FHHR ++D FE E
Sbjct: 125 TRHTLDGAATLLNSNKYFPSRVNIKEISISKLGSVARRVYRIFSHAFFHHRKLFDEFENE 184

Query: 349 THLCKRFTYFVTKYPIIPQEILILPKLDDE 260
           THLCKRFT +V+KY ++ QE LI+P L ++
Sbjct: 185 THLCKRFTTYVSKYNLMQQEHLIVPILPNQ 214


>AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical
           protein T12B3.4 protein.
          Length = 292

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
 Frame = -1

Query: 730 LKMPEVWDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA---AHK 560
           +K+P   +   W   H   F   +N +   + + C  E+C  M    ++ +L      +K
Sbjct: 108 VKLPPSENFDDWLAVHTVDFFNRINLMYGTISDVCTRESCPTMCGGSRYEYLWQDGIEYK 167

Query: 559 TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNI---KD-SSIAKLGSVCRRVYRIFSHA 392
            P   PA  Y +  +D     +N    FPS  N+   KD   I K   +  R++R+F H 
Sbjct: 168 KPTRLPAPQYMQLLMDWIEVRINDEHIFPSSTNVSFPKDFRQICK--KILTRLFRVFVHV 225

Query: 391 YFHHRSIYDAFERETH---LCKRFTYFVTKYPII 299
           Y HH         E H   L K F +FVT+Y ++
Sbjct: 226 YIHHFDRIRELGAEPHANTLYKHFYFFVTEYGMV 259


>Z77660-8|CAB01178.2|  193|Caenorhabditis elegans Hypothetical
           protein F38H4.10 protein.
          Length = 193

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
 Frame = -1

Query: 730 LKMPEVWDEGVWKYEHLRQFCMELNGL-AVRLQNECKPETCTQMTATEQWIFLCAAHKTP 554
           LK+P   D+  W   ++     ++  +  V  ++EC    C  MTA  +  +   +  T 
Sbjct: 26  LKLPPGEDKNEWLAVNIIDLVNQVRMVFGVLCESECTDSKCPSMTAHGRQ-YTWTSEGTL 84

Query: 553 KECPAIDYTRHTLDGAACLLNSNKYFPSRVN--IKDSSIAKLGSVCRRVYRIFSHAYFHH 380
               A  Y   +L      ++    FPS +          +  ++ RR++RI++H YF H
Sbjct: 85  LNTSAPQYIDLSLTACQNNVDDENVFPSEIGKQFPTDFEERCQAIMRRLFRIYAHVYFAH 144

Query: 379 RSIYDAFERETHL---CKRFTYFVTKYPIIPQE 290
            + + A +   HL    K+F  F  ++ ++ +E
Sbjct: 145 VNHFKAIKALAHLNTSFKQFVLFANQFQLLNKE 177


>Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = -1

Query: 694 KYEHLRQFCMELNGLAVRLQNECKPETCTQMT-ATEQWIFLCAAHKTPKECPAIDYTRHT 518
           +YE   +   E + L ++   + KP   +Q T   + W F+  A K P  CP++      
Sbjct: 360 EYEVPEERSAESSDLKIKKNKDGKPRKRSQHTKGNKLWEFIRDALKDPSTCPSVVRWEDP 419

Query: 517 LDGAACLLNSNK---YFPSRVNIKDSSIAKLGSVCRRVY 410
           ++G   ++ S K    + +R N +  +  KL    R  Y
Sbjct: 420 IEGVFRIVESEKLARLWGARKNNEKMTYEKLSRAMRTYY 458


>Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = -1

Query: 694 KYEHLRQFCMELNGLAVRLQNECKPETCTQMT-ATEQWIFLCAAHKTPKECPAIDYTRHT 518
           +YE   +   E + L ++   + KP   +Q T   + W F+  A K P  CP++      
Sbjct: 360 EYEVPEERSAESSDLKIKKNKDGKPRKRSQHTKGNKLWEFIRDALKDPSTCPSVVRWEDP 419

Query: 517 LDGAACLLNSNK---YFPSRVNIKDSSIAKLGSVCRRVY 410
           ++G   ++ S K    + +R N +  +  KL    R  Y
Sbjct: 420 IEGVFRIVESEKLARLWGARKNNEKMTYEKLSRAMRTYY 458


>Z71264-4|CAA95831.1|  348|Caenorhabditis elegans Hypothetical
           protein K07G5.5 protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 702 VFGSMNI*DNFVWSSMDWLCAYKMNANLKHVHK 604
           + GS++I   FV SSMD  C++ MN  L  ++K
Sbjct: 92  ISGSLSIMSTFVDSSMDIACSFVMNICLSEINK 124


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 554 RSFMCCTQKYPLFCCSHLCTCFR 622
           R F+CC    PLF  S+L  C R
Sbjct: 645 RGFLCCNMTNPLFSDSYLDFCLR 667


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 554 RSFMCCTQKYPLFCCSHLCTCFR 622
           R F+CC    PLF  S+L  C R
Sbjct: 645 RGFLCCNMTNPLFSDSYLDFCLR 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,756,361
Number of Sequences: 27780
Number of extensions: 403813
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)