Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n15f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    29   0.53 
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    29   0.70 
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    29   0.70 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   1.6  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   3.7  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = +3

Query: 318 VQQFIQQTIRRDPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCT 497
           ++Q+ + T+    S +EA+ K+P+  D   W   +   F  ++N L   +   C   +C 
Sbjct: 26  LRQYAEATLGSG-SLMEAV-KLPKGEDLNEWIAMNTMDFYTQINMLYGTITEFCTAASCP 83

Query: 498 QMTATEQWIFLCAAHK---TPKECPAIDYTRHTLD 593
           QM A   + +     K    P    A DY  + LD
Sbjct: 84  QMNAGPSYEYYWQDDKIYTKPTRMSAPDYINNLLD 118


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 249 RVDCVGVFELRRSFLLVEWRQDTFVCLYWFEC*QASD 139
           +V  +G+F +RR  +++ W     +C   F C ++ D
Sbjct: 221 KVISIGLFNIRREMMIIIWLLWLIICCILFGCVKSGD 257


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 249 RVDCVGVFELRRSFLLVEWRQDTFVCLYWFEC*QASD 139
           +V  +G+F +RR  +++ W     +C   F C ++ D
Sbjct: 188 KVISIGLFNIRREMMIIIWLLWLIICCILFGCVKSGD 224


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 189 VAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQFIQQ 338
           V  PP +  + V++LRR +   KAKD  ++P+E F   D    +   ++Q
Sbjct: 244 VGKPPFKAPNHVELLRRIQ---KAKDVIKFPEEAFIHPDIKTLICALLKQ 290


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 308 AIHFFKGFIRPATEVLGFGAGSIASEYLNSVG 213
           A+H +K   RP T+  G    S+  +YL   G
Sbjct: 92  AMHGYKVSFRPGTDHAGIATQSVVEKYLQKKG 123


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -1

Query: 484 GLHSFCRRTAN--PLSSIQN--CLRCSYFQTPSSNTSGIFKIASRFEGSRRIV 338
           G+ S  +R+AN  P +S  N   +  S+ +  S+++S  F + S F G+ R+V
Sbjct: 448 GIKSSQQRSANASPATSPSNQASIHASFTKESSTHSSPSFTLESLFSGAPRVV 500


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 261 KDFCRWPDEPFEEMD-STLAVQQFIQQTIRRDPSNLEAILK 380
           K+F + PD PF +M+ S    Q  ++Q  +   + LEA L+
Sbjct: 166 KEFQKHPDNPFNKMNVSYNTSQDEVEQLRKARKAELEARLR 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,573
Number of Sequences: 5004
Number of extensions: 56376
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)