Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n15f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114... 33 0.23
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 33 0.23
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 30 1.6
08_02_0254 - 14879724-14880635 29 2.2
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140 29 2.2
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 29 3.8
10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231... 28 5.0
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700 28 5.0
11_02_0054 - 7816743-7816779,7816843-7816903,7818013-7818460 27 8.7
06_01_0731 + 5380500-5380631,5380717-5380767,5381844-5381889,538... 27 8.7
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021... 27 8.7
>03_05_0110 +
20910084-20910187,20910255-20910303,20911334-20911442,
20911597-20911690,20912253-20912386,20912519-20912682,
20912818-20912889
Length = 241
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +3
Query: 360 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 536
NL +++P D W + F ++N L L C PE+C MTA ++ + A
Sbjct: 67 NLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGTLAEFCTPESCPTMTAGPKYEYRWAD 126
Query: 537 --AHKTPKECPAIDYTRHTLD 593
K P E A Y + +D
Sbjct: 127 GVQIKKPIEVSAPKYVEYLMD 147
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 266 VLGFGAGSIASEYLNSVGHFFWWNGDKILLFVYTGSNV 153
+ GFG GS+ S G FW+ G I+ YTG +
Sbjct: 273 ITGFGMGSVMCVVFGSYGLAFWYGGKLIIEKGYTGGKI 310
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +3
Query: 360 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 536
NL +++P D W + F ++N L L C P TC M+A ++ + A
Sbjct: 858 NLRDAVRLPPGEDLNEWLAVNTVDFFNQVNILYGTLMEFCTPTTCPTMSAGPKFEYRWAD 917
Query: 537 --AHKTPKECPAIDYTRHTLD 593
K P E A Y + +D
Sbjct: 918 GIQIKKPIEVSAPKYVEYLMD 938
>08_02_0254 - 14879724-14880635
Length = 303
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/55 (25%), Positives = 20/55 (36%)
Frame = +3
Query: 408 WKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAHKTPKECPAID 572
W Y++L QFC + +N C E ++ W C P ID
Sbjct: 224 WLYDNLNQFCGAATE-GIDSRNTCISEVARKLVTIGFWCIQCTPEDRPSMSEVID 277
>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
Length = 695
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 249 GTKAKDFCRWPDEPFEEMDSTLAVQQFIQQTIRRDPSNLEAILKMPEV 392
G +A D RWP P+ + T + +Q R P +E + MP +
Sbjct: 341 GVQASDPVRWPQSPWRLLQVTWDEPELLQNVKRVCPWLVELVSSMPNL 388
>01_06_0371 +
28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 260 GFGAGSIASEYLNSVGHFFWWNGDKILLFVYTGSNV 153
GFG GS+ + +S G W+ G ++ Y+G ++
Sbjct: 280 GFGMGSVFFIFFSSYGLAIWYGGKLVVSKGYSGGDI 315
>10_07_0116 -
13022648-13022701,13022781-13022835,13023050-13023175,
13023274-13023340,13024104-13024200,13024362-13024461,
13024527-13024611,13024679-13024755,13024888-13024926,
13025001-13025038,13025118-13025208,13025536-13025628,
13025726-13025781,13025844-13025915,13026078-13026134,
13026397-13026495,13026599-13026964
Length = 523
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 175 NKSILSPFHQKK*PTEFKYSDAIDPAPKPRTSVAGLMNPLKKWI 306
+++ L+ FHQ + ++ ++ A +P +P + LKKW+
Sbjct: 412 DRTHLAEFHQIEGMSKLRFKPAYNPYTEPSMEIFSYHEGLKKWV 455
>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
Length = 813
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 189 VAIPPKEMTDGVQILRRNRPGTKAKDFCRW 278
+A+PPKE G +++ + PGT A+ W
Sbjct: 364 IALPPKEAKAGTWVVQDDVPGTIARANSNW 393
>11_02_0054 - 7816743-7816779,7816843-7816903,7818013-7818460
Length = 181
Score = 27.5 bits (58), Expect = 8.7
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Frame = +3
Query: 207 EMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQFIQQTI-------RRDPSNL 365
E+ V+ L+ RP T+ R+ D P+EE L F+Q + RR
Sbjct: 47 ELKSEVEALQDMRP-TRQSGPRRYVDRPYEESKHGLLKDYFVQNPVYNDTTFRRRFRMKK 105
Query: 366 EAILKMPEVLDEGVW-KYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLC 533
L++ E L G W KY LR + GL+ +C C Q+ + +F C
Sbjct: 106 HLFLRIVEAL--GQWDKYFTLRMDALNRPGLSP--LKKCTSAIC-QLGNDQVLLFWC 157
>06_01_0731 +
5380500-5380631,5380717-5380767,5381844-5381889,
5383356-5383495
Length = 122
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 487 SGLHSFCRRTANPLSSIQNCLRCSYFQTPSSNTSGIFKIASRFEGSRRIV 338
SG H T NP C RC TP+S+ G + I S + +V
Sbjct: 13 SGAHLHRDPTMNPGLGSARCPRCLSLLTPNSSGEGDWAITSVLHDATAVV 62
>02_05_0396 -
28600855-28601475,28601579-28601761,28601970-28602129,
28602217-28602795,28603044-28603618,28604161-28604176,
28605566-28605663,28605774-28606286
Length = 914
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 272 TEVLGFGAGSIASEYLNSVGHFFWWNGDKILLFVYTGSNV 153
T+VLG+G + +++ H WW G + + ++ G+ V
Sbjct: 170 TQVLGYGWAGLMRKFVVEPAH-MWWPGTLVQVSLFRGNIV 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,623
Number of Sequences: 37544
Number of extensions: 348405
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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