Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n15f
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical pr... 196 1e-50
Z71264-4|CAA95831.1| 348|Caenorhabditis elegans Hypothetical pr... 31 0.84
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 30 1.5
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 30 1.5
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 30 1.5
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical pr... 28 4.5
L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily as... 28 4.5
L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily ass... 28 4.5
AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protei... 28 4.5
AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal chem... 28 4.5
AC006649-3|AAF39863.2| 260|Caenorhabditis elegans Hypothetical ... 28 4.5
Z69904-10|CAA93782.2| 754|Caenorhabditis elegans Hypothetical p... 28 5.9
Z69902-13|CAA93770.2| 754|Caenorhabditis elegans Hypothetical p... 28 5.9
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 28 5.9
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 28 5.9
AF025471-2|AAB71062.1| 168|Caenorhabditis elegans Hypothetical ... 27 7.9
>L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical
protein C30A5.3 protein.
Length = 223
Score = 196 bits (477), Expect = 1e-50
Identities = 88/124 (70%), Positives = 99/124 (79%)
Frame = +3
Query: 231 LRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQFIQQTIRRDPSNLEAILKMPEVLDEGVW 410
+RRN PGTK D+ W FEEMDS L +QQ+IQQTI+ +P+++ IL P DEGVW
Sbjct: 10 VRRNGPGTKRADWNNWSPLAFEEMDSALNIQQYIQQTIKANPADVATILTPPLDQDEGVW 69
Query: 411 KYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTL 590
KYEHLRQFC+ELNGLA+ LQ EC PETC QMTATEQWIFLCAAHK P ECPAIDYTRHTL
Sbjct: 70 KYEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCAAHKNPNECPAIDYTRHTL 129
Query: 591 DGAA 602
DGAA
Sbjct: 130 DGAA 133
>Z71264-4|CAA95831.1| 348|Caenorhabditis elegans Hypothetical
protein K07G5.5 protein.
Length = 348
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 403 VFGSMNI*DNFVWSSMDWLCAYKMNANLKHVHK 501
+ GS++I FV SSMD C++ MN L ++K
Sbjct: 92 ISGSLSIMSTFVDSSMDIACSFVMNICLSEINK 124
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 132 RNYQRLVNIRTSIDKQKYLVAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDST 311
RN +++ + ++DK+K I + I N PGT A DEP +
Sbjct: 1281 RNIEKMKKSQENLDKEKSEEKISESKKNQDDSIESPNLPGTPAN---LPVDEPLPPVGRL 1337
Query: 312 LAVQQFIQQTIRRDP 356
V+ + + RRDP
Sbjct: 1338 YIVEHVLPEEYRRDP 1352
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 132 RNYQRLVNIRTSIDKQKYLVAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDST 311
RN +++ + ++DK+K I + I N PGT A DEP +
Sbjct: 1281 RNIEKMKKSQENLDKEKSEEKISESKKNQDDSIESPNLPGTPAN---LPVDEPLPPVGRL 1337
Query: 312 LAVQQFIQQTIRRDP 356
V+ + + RRDP
Sbjct: 1338 YIVEHVLPEEYRRDP 1352
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 132 RNYQRLVNIRTSIDKQKYLVAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDST 311
RN +++ + ++DK+K I + I N PGT A DEP +
Sbjct: 1281 RNIEKMKKSQENLDKEKSEEKISESKKNQDDSIESPNLPGTPAN---LPVDEPLPPVGRL 1337
Query: 312 LAVQQFIQQTIRRDP 356
V+ + + RRDP
Sbjct: 1338 YIVEHVLPEEYRRDP 1352
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 411 KYEHLRQFCMELNGLAVRLQNECKPETCTQMT-ATEQWIFLCAAHKTPKECPAIDYTRHT 587
+YE + E + L ++ + KP +Q T + W F+ A K P CP++
Sbjct: 360 EYEVPEERSAESSDLKIKKNKDGKPRKRSQHTKGNKLWEFIRDALKDPSTCPSVVRWEDP 419
Query: 588 LDG 596
++G
Sbjct: 420 IEG 422
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 411 KYEHLRQFCMELNGLAVRLQNECKPETCTQMT-ATEQWIFLCAAHKTPKECPAIDYTRHT 587
+YE + E + L ++ + KP +Q T + W F+ A K P CP++
Sbjct: 360 EYEVPEERSAESSDLKIKKNKDGKPRKRSQHTKGNKLWEFIRDALKDPSTCPSVVRWEDP 419
Query: 588 LDG 596
++G
Sbjct: 420 IEG 422
>Z74028-1|CAA98424.1| 334|Caenorhabditis elegans Hypothetical
protein C14C10.1 protein.
Length = 334
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 454 NPLSSIQNCLRCSYFQTPSSNTSGIFKIAS 365
NP S + CS Q+PSSN++G+ S
Sbjct: 2 NPFSDVMRKALCSSPQSPSSNSTGLVPFGS 31
>L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform a protein.
Length = 507
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 308 AIHFFKGFIRPATEVLGFGAGSI--ASEYLNSVGHFFWWNG 192
+IH+ K +RP L FGA S+ AS + S G+ W+G
Sbjct: 403 SIHYNKTLLRPLAGGLAFGATSLPSASNIVFSNGYLDPWSG 443
>L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform b protein.
Length = 568
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 308 AIHFFKGFIRPATEVLGFGAGSI--ASEYLNSVGHFFWWNG 192
+IH+ K +RP L FGA S+ AS + S G+ W+G
Sbjct: 464 SIHYNKTLLRPLAGGLAFGATSLPSASNIVFSNGYLDPWSG 504
>AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protein
protein.
Length = 917
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 551 RSFMCCTQKYPLFCCSHLCTCFR 483
R F+CC PLF S+L C R
Sbjct: 645 RGFLCCNMTNPLFSDSYLDFCLR 667
>AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal
chemotaxis protein 14 protein.
Length = 917
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 551 RSFMCCTQKYPLFCCSHLCTCFR 483
R F+CC PLF S+L C R
Sbjct: 645 RGFLCCNMTNPLFSDSYLDFCLR 667
>AC006649-3|AAF39863.2| 260|Caenorhabditis elegans Hypothetical
protein H01M10.2 protein.
Length = 260
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 160 EPV*TNKSILSPFHQKK*PTEFKYSDAIDPAPKPRTS 270
EPV K + PFH +K F D P +P T+
Sbjct: 62 EPVAVQKDSIIPFHNEKLKQRFSLFDMFRPLSQPATT 98
>Z69904-10|CAA93782.2| 754|Caenorhabditis elegans Hypothetical
protein ZK20.6 protein.
Length = 754
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 129 RRNYQRLVNIRTSIDKQKYLVAIPPKEMT 215
RRNY +L N+R D ++Y+ I K++T
Sbjct: 301 RRNYTKLYNVRRFDDLKEYMSIIDWKKLT 329
>Z69902-13|CAA93770.2| 754|Caenorhabditis elegans Hypothetical
protein ZK20.6 protein.
Length = 754
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 129 RRNYQRLVNIRTSIDKQKYLVAIPPKEMT 215
RRNY +L N+R D ++Y+ I K++T
Sbjct: 301 RRNYTKLYNVRRFDDLKEYMSIIDWKKLT 329
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
protein LIN-59 protein.
Length = 1312
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 163 PV*TNKSILSPF-HQKK*PTEFKYSDAIDPAPKP 261
P+ TN + + F H KK +F+ D +P+PKP
Sbjct: 1229 PINTNSYVFTEFTHPKKVVRDFRPYDPSNPSPKP 1262
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 163 PV*TNKSILSPF-HQKK*PTEFKYSDAIDPAPKP 261
P+ TN + + F H KK +F+ D +P+PKP
Sbjct: 1229 PINTNSYVFTEFTHPKKVVRDFRPYDPSNPSPKP 1262
>AF025471-2|AAB71062.1| 168|Caenorhabditis elegans Hypothetical
protein R52.4 protein.
Length = 168
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 436 QNCLRC-SYFQTPSSNTSGIFKIASRFEG 353
+ CL+ +YF+ P+ N GI ++ FEG
Sbjct: 90 EGCLQYEAYFEAPTGNYCGILRVIGVFEG 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,239
Number of Sequences: 27780
Number of extensions: 322600
Number of successful extensions: 882
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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