Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n14f
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 94 2e-20
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 28 0.87
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 2.0
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 2.7
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 3.5
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 3.5
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 4.7
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 6.2
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 6.2
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 93.9 bits (223), Expect = 2e-20
Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 1/167 (0%)
Frame = +1
Query: 79 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 255
+IF I ++A +L +RSL+T+ ASA PPVQ++GL+G YAS+L++AA K LD
Sbjct: 3 HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59
Query: 256 VEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 435
VEK L + ++ + +++I +P L R K + + P N +L +N
Sbjct: 60 VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119
Query: 436 RLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNLEAALKK 576
RL L + F +M A RGE+ ++ +A PLD LE+ + K
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAK 166
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 28.3 bits (60), Expect = 0.87
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 531 WFGCNNFTSYFTPVGSHHNLKSINDSLQFVQATI 430
W G +F + F + +H + S+N L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 355 DALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTC 510
+AL N+I + T + LGL+ RL + +MA H G + C
Sbjct: 5 EALHVGCNRIPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGRINC 56
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 548 LCA*SSGLAVTTSQVTSPRWAAIIILKALMTASSLS-KRPFSASNPSR 408
LC +S LA + P WAA++++ A AS S RP+ + P++
Sbjct: 54 LCLTNSDLAQLPEVQSLPSWAALLLVMATENASPNSFWRPYLSIFPTK 101
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -1
Query: 582 QEFLKRCFQILPLCLI--*WFGCNNFTS 505
Q FL+ CF +L LC I WF F S
Sbjct: 29 QRFLRACFALLCLCCITSYWFSSGPFIS 56
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 434 PFSASNPSRLPVVGERLILLATCFNASTFML 342
PFS S+LPV G ILL F +T+++
Sbjct: 3 PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 220 KERKHTDLPIQILALEVLPFVLRR 149
KER+ L ++ + +VLPF+LRR
Sbjct: 1570 KERERGTLALEAIHKQVLPFMLRR 1593
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 368 CFNASTFMLLFNVGLMMNSLSF-ASVLID 285
C F+LL GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 367 HVANKISLSPTTGNLLGLLAENGRLDKLEAV 459
++ + +S+ P TGN + NG+ + LEA+
Sbjct: 214 NLTDAVSIEPGTGNKFTINFNNGKSETLEAL 244
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 106 ALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQ 285
+LK + S+ + A+ VKP ++ E R SAA + DIV + +Q
Sbjct: 272 SLKSTIFFLSIPSLEATPITVKPESEMGDWESRNVWKEVSAALASGNYDIVSSKKSTIEQ 331
Query: 286 SIKTDAKLKE 315
S + D + KE
Sbjct: 332 S-QRDMRKKE 340
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 187 FGLEGRYASALFSAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLK 339
+G E + A K+ D ++KEL +S+K+ A+ I++ ++
Sbjct: 602 YGEEDPDVIVCYIGADDGKSPDQIQKELADLAESVKSSAEASAKIVSEIIQ 652
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,756
Number of Sequences: 5004
Number of extensions: 46171
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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