Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n14f
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257...    84   7e-17
02_05_0759 + 31545473-31546204                                         48   4e-06
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499     30   1.6  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    27   8.3  
01_07_0336 - 42833205-42834926                                         27   8.3  
01_01_0352 + 2799748-2799865,2800368-2800412,2800890-2801121,280...    27   8.3  

>06_03_0928 +
           26024589-26024645,26024900-26024956,26025464-26025707,
           26026126-26026238,26026675-26026761,26026843-26026962
          Length = 225

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
 Frame = +1

Query: 130 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELGQFQQSIKTDA 303
           R  ++ VA  + + +K P  ++G  G YASALF  A+K   LD VE E+    ++ K   
Sbjct: 23  RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82

Query: 304 KLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMM 483
              +FI + ++ +  +V A+  +  +   S  T N L +LA+NGRL  ++ +   F  + 
Sbjct: 83  LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142

Query: 484 AAHRGEVTCEVVTAKPLDQAQRQNLEAALKKFL 582
            AH+GEV   V T  PL + + + L+  L+  L
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDIL 175


>02_05_0759 + 31545473-31546204
          Length = 243

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 31/118 (26%), Positives = 54/118 (45%)
 Frame = +1

Query: 205 YASALFSAASKTKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKI 384
           YA+AL   AS+   L+    +L + ++    +A + EF  NPT+ R  K   +  +A   
Sbjct: 64  YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122

Query: 385 SLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHRGEVTCEVVTAKPLDQAQRQNL 558
            L     N L ++ +NGR   +  ++  F+    +  G    EV T   + Q + Q+L
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTG---TEVATVTSVVQLESQDL 177


>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
          Length = 454

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 488 AAIIILKALMTASSLSKRPFSASNPSRLPVVG 393
           AA+ +L+    A+++ +RP +   P RLPV+G
Sbjct: 15  AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46


>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
            32208604-32208814,32208927-32209108,32209196-32209297,
            32210002-32211187,32212103-32212499,32212551-32212582,
            32212885-32213157,32213307-32213394,32213486-32213723,
            32213824-32214034,32214119-32214300,32214378-32214479,
            32214801-32216224,32216751-32216822,32217688-32217719,
            32218186-32218263,32218425-32218512,32218608-32218845,
            32219060-32219162,32219386-32219558,32219644-32219745,
            32219825-32220606,32220659-32221012,32224055-32224140,
            32224250-32224400,32224534-32224771,32224876-32225119,
            32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 300  CKAQGIHHQPDIKKKH 347
            CK++GIH   +I+KKH
Sbjct: 1928 CKSRGIHRSKEIQKKH 1943


>01_07_0336 - 42833205-42834926
          Length = 573

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
 Frame = +1

Query: 256 VEKELGQF----QQSIKTDAKLKEFIINPTLKRSMKVDA----LKHVANKISLSPTTGNL 411
           VEK L  F    +++++ DA L + ++   L    K+DA       + +K +LSP  G  
Sbjct: 400 VEKALQYFTEMVEKNLEADAALLDVMVKG-LCSDDKIDASYAFFVEMVDKANLSPWQGTY 458

Query: 412 LGLLAENGRLDKLEAVINAFKIMMA 486
             ++ E  R+ KLE  +   + M A
Sbjct: 459 KHIIGELLRVKKLEEALGLLRSMKA 483


>01_01_0352 +
           2799748-2799865,2800368-2800412,2800890-2801121,
           2801242-2801321,2801417-2801570,2801655-2801733,
           2801900-2801984,2802121-2802167,2802301-2802471
          Length = 336

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 584 FRNFLSAASKFCLCA*SSGLAVTTSQVTSPRWAAIIILKALMTASSLSKRPFSASNP 414
           F NFL           +SG+ + TS+V + R A +II      A+S+ ++     NP
Sbjct: 41  FWNFLDYREFIIQSGGASGIGLETSRVFAMRGAHVIIAARNTEAASVVRKKIIEENP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,058,375
Number of Sequences: 37544
Number of extensions: 294722
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)