Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n14f
(585 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 0.96
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.7
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 6.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 6.7
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 21 8.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 8.9
AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein. 21 8.9
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 21 8.9
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 0.96
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 407 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 303
LP V + + LL + FN FM+ +V L + L+F
Sbjct: 315 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNF 349
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 407 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 303
LP V + + LL + FN FM+ +V L + L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 407 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 303
LP V + + LL + FN FM+ +V L + L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 407 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 303
LP V + + LL + FN FM+ +V L + L F
Sbjct: 247 LPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIF 281
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 407 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 303
+P + + L+ + FN FM+ +V L + L+F
Sbjct: 315 MPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLNF 349
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.4 bits (43), Expect = 6.7
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +1
Query: 64 LLTCANIFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYA 210
+L C +FL + + LLV + + A +V P ++ + G ++
Sbjct: 60 ILVCVAVFLVRKLRRPCNYLLVSLAVSDLCVALLVMPMALLYEISGNWS 108
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 274 QFQQSIKTDAKLKEFIINPTLKRS 345
+F+ SIK KLK+ I T K S
Sbjct: 661 EFRSSIKASDKLKDSRIKTTEKLS 684
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 8.9
Identities = 5/14 (35%), Positives = 11/14 (78%)
Frame = -2
Query: 98 ILFKNIFAHVNNIF 57
+ F+NI +H+N ++
Sbjct: 261 LTFENILSHINTVY 274
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 8.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 407 LPVVGERLILLATCFNASTFMLLFNV 330
+P + + LL T FN FM+ +V
Sbjct: 284 MPATSDAVPLLGTYFNCIMFMVASSV 309
>AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein.
Length = 50
Score = 21.0 bits (42), Expect = 8.9
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = -1
Query: 183 LHWRFYHLC 157
++W YHLC
Sbjct: 38 IYWSMYHLC 46
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 8.9
Identities = 5/14 (35%), Positives = 11/14 (78%)
Frame = -2
Query: 98 ILFKNIFAHVNNIF 57
+ F+NI +H+N ++
Sbjct: 261 LTFENILSHINTVY 274
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,482
Number of Sequences: 438
Number of extensions: 2937
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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