Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n13f
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   177   1e-45
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   175   4e-45
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   168   7e-43
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.56 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   2.3  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   3.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.0  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   6.9  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   9.1  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  177 bits (431), Expect = 1e-45
 Identities = 86/166 (51%), Positives = 112/166 (67%)
 Frame = +1

Query: 139 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 318
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 319 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 498
           +I L R+AR  GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129

Query: 499 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGXRIPITSTA 636
           AT  ML++ EPY+ +G PNLK+VREL+YKRGF K++  RI ++  A
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNA 175


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  175 bits (426), Expect = 4e-45
 Identities = 82/159 (51%), Positives = 109/159 (68%)
 Frame = +1

Query: 160 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 339
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 340 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 519
           AR  GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA   ML+
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135

Query: 520 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGXRIPITSTA 636
           + EPY+ +G PN K+VREL+YKRGF K++  RIP++  A
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNA 174


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  168 bits (408), Expect = 7e-43
 Identities = 78/159 (49%), Positives = 107/159 (67%)
 Frame = +1

Query: 160 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 339
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR +ER+ IRL R 
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74

Query: 340 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 519
           A+N+G+ +VP E KL FVIRI G+  + PK+RKVL+L RL +INN VFVR NKA   MLR
Sbjct: 75  AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134

Query: 520 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGXRIPITSTA 636
           I EPY+ +G PNL SVREL+YKRGF K++G RI ++  A
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNA 173


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 241 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 357
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 340  ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 459
            + N+G YY  G   +AFV  I G+ + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 508 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGXRIPITST 633
           N  +I+ PY     GYP +K  + L YK    KLS   +PI +T
Sbjct: 35  NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTT 77


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 274 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 375
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 122 SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 295
           S+G+   ++C L+Q+ C    R  R   +   +    G+ LP +   K   G  S  R
Sbjct: 18  SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
 Frame = +1

Query: 136 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRS--SAIKKKREIFKRAEQYVKEYRIK 309
           D  ++PA+PE  +K             Q   KR +  S ++ K  +  ++   V+EY   
Sbjct: 441 DENRIPALPE--VKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLEAKSND-VEEYDAF 497

Query: 310 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFR 456
            +DEI     + N  N     E  + + +    + Q+S +  K   LF+
Sbjct: 498 YKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQISNQQLKFASLFK 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,976
Number of Sequences: 5004
Number of extensions: 46549
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)