Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n12f
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    30   0.39 
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    27   3.6  
AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine re...    27   4.8  
AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical...    27   4.8  
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    26   8.3  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    26   8.3  

>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 30  IFLLQHQLTMSL---FVVIVFIKKSKMFYVFLTSFKQKC 137
           +F+L   +T SL   F+V++FI    +F++F    + KC
Sbjct: 180 VFVLATDITYSLLSVFLVVIFIISEILFFIFYVKIQMKC 218


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 2   WHIKLAFYWNFFIATSINDVTFCCYC 79
           W +K  F W FF    +    FCC C
Sbjct: 123 WMLKPWFKWTFFAFGLLTGGFFCCCC 148


>AF067950-3|AAG24158.2|  371|Caenorhabditis elegans Serpentine
           receptor, class w protein137 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 20  FYWNFFIATSINDVTFCCYCIY 85
           FY+NF +  S N  T C  C +
Sbjct: 308 FYYNFSLLLSANTATHCIVCFF 329


>AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical
           protein C05C8.8 protein.
          Length = 387

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 210 MRIHITRXXXXXXLKIINYFVYSDYISV*TTSR 112
           +RI   R      +++++ FVYSD IS+ TTS+
Sbjct: 80  VRIGAFRHIKDAQVRLLSSFVYSDQISIVTTSQ 112


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 15  LLSIGIFLLQHQLTMSLFVVIVFIKKSKMFYVF 113
           +LS+  FLL   + +++F+     KK +MF ++
Sbjct: 15  ILSLSTFLLNFYIFLAIFIFKKIPKKPEMFLIY 47


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 30  IFLLQHQLTMSLFVVIVFIKKSKMFYVF 113
           +F+L  +LT  L ++I+F+  S+  +VF
Sbjct: 249 VFILIFKLTTILMLIIIFLYDSEQAFVF 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,287,555
Number of Sequences: 27780
Number of extensions: 61401
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)