Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12n11r
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 399 e-112
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 75 1e-14
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 74 3e-14
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 42 1e-04
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.31
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.95
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.1
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 8.9
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 8.9
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 399 bits (982), Expect = e-112
Identities = 194/239 (81%), Positives = 215/239 (89%)
Frame = -3
Query: 758 LTXAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 579
LT AEYFRD EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERI
Sbjct: 283 LTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERI 342
Query: 578 TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSR 399
TTTKKGSITSVQA+YVPADDLTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR
Sbjct: 343 TTTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSR 402
Query: 398 IMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQ 219
+MDP I+G EHYN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQ
Sbjct: 403 MMDPRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQ 462
Query: 218 PFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 42
PF VAEVFTG G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V KA+ +A+
Sbjct: 463 PFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 74.9 bits (176), Expect = 1e-14
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Frame = -3
Query: 758 LTXAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 579
L+ +E+ Q + VL + ++ + A EVSA +P GY + TD+ T+ ER
Sbjct: 257 LSASEFLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERA 316
Query: 578 TTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 405
+ GSIT + + +P DD+T P P T + + R + IYP ++ L S
Sbjct: 317 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSL 376
Query: 404 SRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI 237
SR+M I +H +V+ + + + + +++G + LS+ED+L + K
Sbjct: 377 SRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKF 436
Query: 236 QR-FLSQ 219
++ F+SQ
Sbjct: 437 EKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 73.7 bits (173), Expect = 3e-14
Identities = 54/193 (27%), Positives = 99/193 (51%), Gaps = 13/193 (6%)
Frame = -3
Query: 758 LTXAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 579
+T AEY+RDQ G++V + D+ R+ +A E+S L +P+ GY L + + ER
Sbjct: 339 ITLAEYYRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERA 397
Query: 578 -------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVD 420
+ ++G+++ V A+ P D +DP + T + L + +A+ +P+++
Sbjct: 398 GRARCLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSIN 457
Query: 419 PLDSTSRIMDPNIIGAEH----YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTV 255
S S+ ++ E +N R +++I+Q S+ +II ++G LSE DK+T+
Sbjct: 458 TSLSYSKYINALQPWYEERVPGFNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTL 517
Query: 254 ARARKIQR-FLSQ 219
A I+ FL Q
Sbjct: 518 DIAGIIKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 41.5 bits (93), Expect = 1e-04
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 4/181 (2%)
Frame = -3
Query: 746 EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK 567
E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 283 EWFRDN-GKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS 341
Query: 566 K----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSR 399
GS+T++ I D++ P + D L + GI PA++ S SR
Sbjct: 342 PKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSR 401
Query: 398 IMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQ 219
+ + A VA ++ L Y+ + A G D L + T+ R ++ L Q
Sbjct: 402 VGSAAQVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQ 458
Query: 218 P 216
P
Sbjct: 459 P 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -3
Query: 548 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 375
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 374 AEHYNVARGVQKILQDYKSL 315
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.95
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -3
Query: 590 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 468
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 572 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 435
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/54 (18%), Positives = 28/54 (51%)
Frame = +3
Query: 480 QVSKSGSWSRICQVISWYINSLYRCDGTFLGGGNSFLHSTHVSSQSRLISYSRW 641
++S++ S+ ++++ Y+ + D F+G SF+ +T +++ + W
Sbjct: 302 RISRADSYDHDIRMLAKYLQEVTLMDEIFIGAHISFIAATAYYLSMQMLGHLDW 355
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 163 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 288
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,100
Number of Sequences: 5004
Number of extensions: 67105
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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