Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n09r
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...   284   5e-77
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...   174   5e-44
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    73   2e-13
Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical...    30   1.5  
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF040657-4|AAB95053.1|  261|Caenorhabditis elegans Hypothetical ...    29   2.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score =  284 bits (696), Expect = 5e-77
 Identities = 136/195 (69%), Positives = 166/195 (85%), Gaps = 1/195 (0%)
 Frame = -3

Query: 747 LTEIL-GDSEKAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKM 571
           + EIL  DSEK   II+A++ SMGMDIS +DL NI+ FA RV +L  YR+Q+ EY+  +M
Sbjct: 236 ILEILDNDSEKTAQIIEAARTSMGMDISDLDLENIKRFAARVSSLMEYRQQLHEYIKDRM 295

Query: 570 NSVAPNLSTLVGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYG 391
           +  AP+LS L+G+QVGARLIS AGSLTNLAKYPAST+QILGAEKALFRALKTRSNTPKYG
Sbjct: 296 DHCAPSLSALIGEQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYG 355

Query: 390 LLYHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRLKFYE 211
           LL+HS+FIG+AG KNKGR+SRYLANKCSIA+R+DCFSE   + +GE LRQQVEDRL+++ 
Sbjct: 356 LLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGEFLRQQVEDRLEYFT 415

Query: 210 TGDIPKKNIEVMKEA 166
           +G +PKKNI+VMKEA
Sbjct: 416 SGTVPKKNIDVMKEA 430


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score =  174 bits (424), Expect = 5e-44
 Identities = 95/188 (50%), Positives = 135/188 (71%), Gaps = 1/188 (0%)
 Frame = -3

Query: 747 LTEILGDSEKAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSKMN 568
           L+ IL + E  + + + +++SMG DIS +DLI+I+    +V+ LS YR Q+ +YL ++M 
Sbjct: 220 LSSILPE-ELEEKVKEDAEISMGTDISDIDLIHIKGLCDQVIELSAYRAQLFDYLKNRMT 278

Query: 567 SVAPNLSTLVGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKYGL 388
           ++APNL+ L+G+ VGARLIS AGSL +LAK PAST+QILGAEKALFRALKT+ +TPKYGL
Sbjct: 279 ALAPNLTVLLGELVGARLISHAGSLVSLAKAPASTIQILGAEKALFRALKTKKDTPKYGL 338

Query: 387 LYHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFS-EMQSAVFGEKLRQQVEDRLKFYE 211
           +YH+  I +A  K KG+++R LA KCS+A+RID  S E  +   G + R  +E+ L+  E
Sbjct: 339 IYHAQLITQAPPKVKGKMARKLAAKCSLATRIDALSDESATNEIGIECRAALENVLR-TE 397

Query: 210 TGDIPKKN 187
           +   P KN
Sbjct: 398 SERGPSKN 405


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 1/203 (0%)
 Frame = -3

Query: 753 EPLTEILGDSEKAQAIIDASKMSMGMDISPVDLINIQMFAGRVVALSNYRKQISEYLHSK 574
           E L  IL D+     +      + G+ + P +L  +         L   R ++ + +  +
Sbjct: 162 EQLGGIL-DASTCMVVSVTVSTTQGVKLEPNELETVMDACNLAAQLHVNRLEMHQLVEWR 220

Query: 573 MNSVAPNLSTLVGDQVGARLISKAGSLTNLAKYPASTLQILGAEKALFRALKTRSNTPKY 394
           M  +APNL  L+G    A L+S+AG L+ LA  P+  +Q+LG  K       T S  P +
Sbjct: 221 MALIAPNLVALLGSTTTAHLVSQAGGLSPLATMPSCNVQVLGKTKKNLIGFSTVSTNPHH 280

Query: 393 GLLYHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEMQSAVFGEKLRQQVEDRL-KF 217
           G +Y    + +     K + ++ LA K ++ +RID   E  +   G +    VE +  K 
Sbjct: 281 GFIYFHQLVQKMPPDLKNKAAKILAAKVTLVARIDAQHESSNGEKGAEFLALVESKFEKM 340

Query: 216 YETGDIPKKNIEVMKEAMDEVQK 148
            E    P K  + + + +D+  K
Sbjct: 341 LEPP--PVKANKALPKPLDKASK 361


>Z19152-7|CAA79539.2|  643|Caenorhabditis elegans Hypothetical
           protein B0464.6 protein.
          Length = 643

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
 Frame = -3

Query: 435 LFRALKTRSNTP--KYGLLYHSTFIGRAGLKNKGRISRYLANKCSIASRIDCFSEMQSAV 262
           L + L     TP  K G+L  S  I RAG++++ R         S  + I      Q+  
Sbjct: 330 LHKILNAAKLTPEGKTGILKRSNSIDRAGIRSRRRSHSSPERSTSTENEI----RYQT-- 383

Query: 261 FGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQKAVDAE 133
            GE L +  + R +F     I    +E + E +D+V K +D E
Sbjct: 384 -GELLTEDQQKRAEFMTRAWIRNTILEPLAEHIDKVNKILDKE 425


>AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14b protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 653 IKSTGEISIPMDIFEASMIACAFSESPRIS 742
           +K T +I I    FE + I+C F E+PRIS
Sbjct: 15  MKKTEKIRIFWRFFEKNRISCIFQENPRIS 44


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 213 ETGDIPKKNIEVMKEAMDEVQKAVDAEA 130
           E   IPKK +E +KE+++  QK VD +A
Sbjct: 497 EIPSIPKKELEALKESIENGQKFVDDDA 524


>AF040657-4|AAB95053.1|  261|Caenorhabditis elegans Hypothetical
           protein T20H9.4 protein.
          Length = 261

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 6   KVQYLNTNSN*ILHYSTNLRPWPHSRLIRT 95
           +V+YL+ N+  ++ Y T  RPW H  + R+
Sbjct: 232 RVEYLSDNNIFVISYGTTSRPWVHCCIERS 261


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 270  SAVFGEKLRQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQKAVDAE 133
            S +F      ++ D +   ++  +P    E+MKE M+ +  +VDAE
Sbjct: 3006 SDIFDYPTVDELSDHIVRKKSSSVPPAASEIMKETMNGISTSVDAE 3051


>AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical
           protein F43C11.7 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 246 RQQVEDRLKFYETGDIPKKNIEVMKEAMDEVQKAVD 139
           ++QV+D+++  E   + KKN E+ KE  DE+ +  D
Sbjct: 158 KKQVDDKIQALEKAAL-KKNDELYKEKYDEITRHYD 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,494,777
Number of Sequences: 27780
Number of extensions: 340008
Number of successful extensions: 1016
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)