Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n09r
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.1  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   4.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.4  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 204 HRSHRISDGLLLADGV 251
           HRS  + DG++LA G+
Sbjct: 281 HRSIDVKDGIVLATGI 296


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 591 EYLHSKMNSVAPNLSTLVGDQVGARLISKAGSLTNLA 481
           +YL  +  SVA  +    GD   ++L  KA +L +L+
Sbjct: 35  DYLPDRYRSVATQVFNRFGDDTESKLPVKAITLPDLS 71


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 327 YLANKCSIASRIDC 286
           YLA+KC++ +  DC
Sbjct: 161 YLASKCALTTLTDC 174


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 204 HRSHRISDGLLLADGV 251
           HRS  + DG++LA G+
Sbjct: 281 HRSIDVKDGIVLATGI 296


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 317 ISAQLHPGSIVSLKCN 270
           I   L PG  VSLKC+
Sbjct: 429 IEQTLQPGPAVSLKCS 444


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 317 ISAQLHPGSIVSLKCN 270
           I   L PG  VSLKC+
Sbjct: 429 IEQTLQPGPAVSLKCS 444


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 460 ADIGCRKSSLPSSEDTFEYSKIWSAIPLHVH 368
           AD GCR  S  SS  T  +    +   ++VH
Sbjct: 110 ADGGCRNFSTCSSHPTAAFISYGTLFFIYVH 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,444
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)