Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12n09f
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...   137   1e-33
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    81   9e-17
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    27   1.5  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   3.5  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.7  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    25   6.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score =  137 bits (331), Expect = 1e-33
 Identities = 74/161 (45%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
 Frame = +3

Query: 105 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 284
           Y+L+E + G++LF V   +++AA   +V+ S+ D+ +F  VV L +F P K+A  ALEN 
Sbjct: 4   YLLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENA 63

Query: 285 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAI-SEALEIQCTHTGAVPEI 461
           N +SEG+L + L  FLE  LPK  K+ K +LGV D  L  +I SE   I+C  +    ++
Sbjct: 64  NDISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDL 123

Query: 462 LRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVH 584
           LRGIR+H   L+K L+      AQLGLGHSYSRA+VKFNV+
Sbjct: 124 LRGIRFHGDKLLKQLSPGDFERAQLGLGHSYSRAKVKFNVN 164


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 81.4 bits (192), Expect = 9e-17
 Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 2/160 (1%)
 Frame = +3

Query: 105 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 284
           ++L E +AG+A+F+  +  +L      + E +   +  + ++ L +F   +S + AL+N+
Sbjct: 2   FILTETAAGYAIFKAKD--KLLKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNV 59

Query: 285 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISE--ALEIQCTHTGAVPE 458
           +A+ EG +   L+  LEG L   K     TL V DPKLG AI++   LE +     +V +
Sbjct: 60  SALVEGKVSSKLSSLLEG-LSDSKSS---TLVVADPKLGNAINKLPGLEFEIISDSSVQD 115

Query: 459 ILRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFN 578
           + RGIR H  SLI GL     +   LGL HS SR ++KF+
Sbjct: 116 LYRGIREHLSSLISGLAPSDLNAMSLGLSHSLSRHKLKFS 155


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 120 HSAGFALFRVAEFEEL---AAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIV 269
           HS G + FR+ + EEL   +   P+V +     Q + A   L+ F   K  IV
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIV 190


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/35 (25%), Positives = 24/35 (68%)
 Frame = +3

Query: 204 DLQRFNAVVTLIAFQPHKSAIVALENINAVSEGIL 308
           D++  NA++ L+   P++S ++  E++++  +G+L
Sbjct: 521 DVESQNAILLLLGCFPNQSPVLISESVSSYIQGVL 555


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 426 IQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARV 569
           I+C  TG +  ILR +R   H L        C V Q  + H +S  ++
Sbjct: 527 IECIDTGHLQFILRALRPQIHVL--SAHPYGCRVIQRAIEHCHSERKL 572


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 255 CVVGKLLKSQQH*NVANLSRTLRPEAGKPLTL 160
           CV+   L+ ++H ++  L   + PEAGK + L
Sbjct: 44  CVILGTLEFRKHRSIRRLQSMIVPEAGKSIQL 75


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = -3

Query: 406 AAPSLGSSTPSVHFDRFFLFGRPPSRNRFKSSGRIPSDTALIFSKATIADLCGWKAIKVT 227
           A PS  SSTPS            P  +   SS  IP+ ++  FS +      G  +  + 
Sbjct: 517 AIPSTSSSTPSSSIIS------SPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIP 570

Query: 226 TALKRCKSVTDSST 185
           +      S+  SST
Sbjct: 571 STFSSVSSILSSST 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,335
Number of Sequences: 5004
Number of extensions: 48681
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)